Non-Coding RNA Search

Ss1.1-Pig4-TMW8068H05.3

Sequence:


               
               ATTTTCCCTGCTTAGGTGTTATGGGGCAGAGCTTTGCCCCACAGAGGTGCGAGGGAAGAA
TTGGGCAGGTTCTTTATGAATGCATGGGGACTGCTGTGCTAGTCCTAATGTTTTATAATC
CTGGCATTTAACTACTGGAGAGACCAGATTCTTGGTTGATGACTTAGTTATCTGTGAACT
GTGAAAGTTTAGGAGCATTGCTGTGTAGAAAATGTTAGTCTGTCAACTTTGTGTGCTGAA
AGGGGATGTTACTGTACTGTTCTCCAGTGTAGACTTCTTAGGCACAACTTAAAGGAATGT
AGCATGTAAGGAATGAAGCCTCTCAAATAGTAATCATGGATTTACGTGTGGCAGATCCTA
CTGACATTTGGACGTGGTGGTTGAAAGAAATGATAGAGGTTTTGAACTACTGACAATCTT
AAAAGTGAATTGAAAAACTTTTCATACTTTTTGATGTAAATTTCCTTCGATTAGTGTCAG
TGATTCAGATAACTCTTGATCTTAAGGTAATGAATGGCTTTTCAAAGGTTTCTTATATTT
TATATCTCTACTGAGTGAGAATTGTCATTTTAGATTTTTGACATTTGTATCAAGAGAAGT
TGAGGAAATCTTCTGAACACCAGTAACTTTGAATTTGCTATGGACTTCTGAAATGTTCAA
TTATGTGTCTGATAAACGCTTTTGCACGTGCAGTATCTTCTGCCAGCAAACCCAAGGGAC
CACATCCTTTTTTATATGAAACAGGTCACCTCTAGAGGACAACCCAAAATTTATTAAAGG
AAATGTTGAACCTATGCTTAAATAAGTATTAATAATGTCTTTATAATTTGTTTCCTTTAG
ATAAATTTTGGAATTTGTGTATATTGTATGCAGGGGGAGGTGTGAAAATTAGGAAAGTGT
TCTTTTGGATCTGGGGTGAGTGACTCTTTGGAGATCTAGAGAGATCTAATGGTAAGAGCA
AGGGTTCATCACCACAAGAAGTAAAAACCATAGTGATTTTTTTCTTCGTGCGTAGAGGTT
GTTTTTCTGGCAATAATTAATATTAGATTTCTATTTCAATACATAAGTATATGAATTACA
ATATGAATTGCACTCCCAAAACTAGATTTCTGCTTTGGTAGGTTTGTTTGCTGTGAAGAT
TACTTAAGAGACAAATGTTCGTATTAGCTTAACTTTTGGTTTAAATATGTTTGTAAATGA
TGTAATATATTTCTTTTGACTAAACCTGGGGGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCCCTGCTTAGGTGTTATGGGGCAGAGCTTTGCCCCACAGAGGTGCGAGGGAAGAA
TTGGGCAGGTTCTTTATGAATGCATGGGGACTGCTGTGCTAGTCCTAATGTTTTATAATC
CTGGCATTTAACTACTGGAGAGACCAGATTCTTGGTTGATGACTTAGTTATCTGTGAACT
GTGAAAGTTTAGGAGCATTGCTGTGTAGAAAATGTTAGTCTGTCAACTTTGTGTGCTGAA
AGGGGATGTTACTGTACTGTTCTCCAGTGTAGACTTCTTAGGCACAACTTAAAGGAATGT
AGCATGTAAGGAATGAAGCCTCTCAAATAGTAATCATGGATTTACGTGTGGCAGATCCTA
CTGACATTTGGACGTGGTGGTTGAAAGAAATGATAGAGGTTTTGAACTACTGACAATCTT
AAAAGTGAATTGAAAAACTTTTCATACTTTTTGATGTAAATTTCCTTCGATTAGTGTCAG
TGATTCAGATAACTCTTGATCTTAAGGTAATGAATGGCTTTTCAAAGGTTTCTTATATTT
TATATCTCTACTGAGTGAGAATTGTCATTTTAGATTTTTGACATTTGTATCAAGAGAAGT
TGAGGAAATCTTCTGAACACCAGTAACTTTGAATTTGCTATGGACTTCTGAAATGTTCAA
TTATGTGTCTGATAAACGCTTTTGCACGTGCAGTATCTTCTGCCAGCAAACCCAAGGGAC
CACATCCTTTTTTATATGAAACAGGTCACCTCTAGAGGACAACCCAAAATTTATTAAAGG
AAATGTTGAACCTATGCTTAAATAAGTATTAATAATGTCTTTATAATTTGTTTCCTTTAG
ATAAATTTTGGAATTTGTGTATATTGTATGCAGGGGGAGGTGTGAAAATTAGGAAAGTGT
TCTTTTGGATCTGGGGTGAGTGACTCTTTGGAGATCTAGAGAGATCTAATGGTAAGAGCA
AGGGTTCATCACCACAAGAAGTAAAAACCATAGTGATTTTTTTCTTCGTGCGTAGAGGTT
GTTTTTCTGGCAATAATTAATATTAGATTTCTATTTCAATACATAAGTATATGAATTACA
ATATGAATTGCACTCCCAAAACTAGATTTCTGCTTTGGTAGGTTTGTTTGCTGTGAAGAT
TACTTAAGAGACAAATGTTCGTATTAGCTTAACTTTTGGTTTAAATATGTTTGTAAATGA
TGTAATATATTTCTTTTGACTAAACCTGGGGGGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               2-117, + strand, RNAz p=0.905198
               

               
               880-986, - strand, RNAz p=0.711638

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-117, + strand, RNAz p=0.905198
               

               
               880-986, - strand, RNAz p=0.711638

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014701, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014701, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1236, gnl|bosTau2|chr10 (42355726-42354438)
               

               
               2-1236, gnl|Hg17|chr15 (47070252-47068964)
               

               
               2-1236, gnl|Mm7|chr2 (125479763-125478526)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1236, gnl|bosTau2|chr10 (42355726-42354438)
               

               
               2-1236, gnl|Hg17|chr15 (47070252-47068964)
               

               
               2-1236, gnl|Mm7|chr2 (125479763-125478526)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               nco (0.161734)

	2-117, + strand, RNAz p=0.905198
	880-986, - strand, RNAz p=0.711638

	2-1236, gnl\|bosTau2\|chr10 (42355726-42354438)
	2-1236, gnl\|Hg17\|chr15 (47070252-47068964)
	2-1236, gnl\|Mm7\|chr2 (125479763-125478526)