Non-Coding RNA Search

Ss1.1-Pig4-TMW8068H10.3

Sequence:


               
               AGAAGCACCTCCAAGCAAGTCGCCATCAATGCCATCTCTGACCCAATTTGATTCTAACAT
TGCACCAGCTGATCCTGATACTGCTATTGTTCATCCAGTTCCTATTCGTATGACTCCAAG
CAAAATCCACATGCAGGAAATGGAACTTAAAAGAACTAGCAGTGATCATACTAATCCCAC
TAGCCCATTGCTTGTGAAAACATCTGACCTTTCAGAAGAAAATAAGATAAATTCATCAGT
GAAATTTGCTTCTGGAAATACTGTAGCAGATGGTTACAGTAGTTCAGATTCTTTTACTTC
GGATCCAGAACAGATTGGGAACAATGTAACTCGCCAAAGGTCTCAGTCAGGAACGTCGCC
TGATAACACTGCACCACCACCTCCCCCTCCAAGGCCTCAGCCCTCTCATTCTAGATCATC
ATCTTTAGATATGAATCGGACCTTTTCAGTCACCACAGGACAGCAACAGGCTGGAGTTGT
TGCCCAACCTCCTGCAGTGCCTCCCAGACCACAGCCCTCACAGGCTCCTGGTCCCGTTGT
GCATCGCCCAGTGGATGCTGATGGCCTGATAACTCACACCAGTACCTCACCTCAGCAGAT
ACCAGAACAACCAAATTTTGCAGATTTCAGCCAGTTTGAAGTATTTGCTGCATCAAATGT
AAATGAAGAACAGGATGATGAAGCTGAGAAACATCCAGAGGTCTTGGTTGAAAAAGCTTC
TGATCCTGCAAGTTCCCTTCGAGTTGCCAAAACAGATAGTAAAATTGAAGAAAAGACAGC
TGCTATTGCTCCCGCCAATGTGAGCAAAGGTACAACACCTCTTGCTCCACCACCTAAACC
TGTTCGAAGAAGATTAAAATCAGAAGATGAATTAAGGCCAGAAATTGATGAGCATACACA
AAAGACAGGTGTCCTAGCTGCTGTTCTTGCATCACAACCTTCTATTCCTAGGTCTGTTGG
GAAAGATAAGAAAGCTATTCAGGCATCAATTAGACGCAATAAGGAAACCAACACAGTTTT
GGCCAGATTGAATAGTGAATTGCAGCAACAATTAAAGGATGTCCTTGAGGAGAGAATTTC
CCTGGAAGTTCAACTGGAACAACTTCGACCATTCTCTCACCTCTAAGCCAATTGCCGTTA
ACTGTGAACATACCCATTTTTAAGCGGTTTTGGGTTCAAAGCCAATTTGGAGACCCAGAC
ATTCAGTTCACTGCTTAAATTCAGCATTAAATTTTATGATTCTGTTTTGCCCTATATGTC
CACCAATGTATTTAAGTATCTTTTATTTTTTAATTTCAACAATAAAAAGGTCAGGATGAC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCACCTCCAAGCAAGTCGCCATCAATGCCATCTCTGACCCAATTTGATTCTAACAT
TGCACCAGCTGATCCTGATACTGCTATTGTTCATCCAGTTCCTATTCGTATGACTCCAAG
CAAAATCCACATGCAGGAAATGGAACTTAAAAGAACTAGCAGTGATCATACTAATCCCAC
TAGCCCATTGCTTGTGAAAACATCTGACCTTTCAGAAGAAAATAAGATAAATTCATCAGT
GAAATTTGCTTCTGGAAATACTGTAGCAGATGGTTACAGTAGTTCAGATTCTTTTACTTC
GGATCCAGAACAGATTGGGAACAATGTAACTCGCCAAAGGTCTCAGTCAGGAACGTCGCC
TGATAACACTGCACCACCACCTCCCCCTCCAAGGCCTCAGCCCTCTCATTCTAGATCATC
ATCTTTAGATATGAATCGGACCTTTTCAGTCACCACAGGACAGCAACAGGCTGGAGTTGT
TGCCCAACCTCCTGCAGTGCCTCCCAGACCACAGCCCTCACAGGCTCCTGGTCCCGTTGT
GCATCGCCCAGTGGATGCTGATGGCCTGATAACTCACACCAGTACCTCACCTCAGCAGAT
ACCAGAACAACCAAATTTTGCAGATTTCAGCCAGTTTGAAGTATTTGCTGCATCAAATGT
AAATGAAGAACAGGATGATGAAGCTGAGAAACATCCAGAGGTCTTGGTTGAAAAAGCTTC
TGATCCTGCAAGTTCCCTTCGAGTTGCCAAAACAGATAGTAAAATTGAAGAAAAGACAGC
TGCTATTGCTCCCGCCAATGTGAGCAAAGGTACAACACCTCTTGCTCCACCACCTAAACC
TGTTCGAAGAAGATTAAAATCAGAAGATGAATTAAGGCCAGAAATTGATGAGCATACACA
AAAGACAGGTGTCCTAGCTGCTGTTCTTGCATCACAACCTTCTATTCCTAGGTCTGTTGG
GAAAGATAAGAAAGCTATTCAGGCATCAATTAGACGCAATAAGGAAACCAACACAGTTTT
GGCCAGATTGAATAGTGAATTGCAGCAACAATTAAAGGATGTCCTTGAGGAGAGAATTTC
CCTGGAAGTTCAACTGGAACAACTTCGACCATTCTCTCACCTCTAAGCCAATTGCCGTTA
ACTGTGAACATACCCATTTTTAAGCGGTTTTGGGTTCAAAGCCAATTTGGAGACCCAGAC
ATTCAGTTCACTGCTTAAATTCAGCATTAAATTTTATGATTCTGTTTTGCCCTATATGTC
CACCAATGTATTTAAGTATCTTTTATTTTTTAATTTCAACAATAAAAAGGTCAGGATGAC
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q59GG6_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q59GG6_HUMAN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               82-1318, gnl|bosTau2|chr2 (70258232-70259461)
               

               
               82-1318, gnl|Hg17|chr6 (139283918-139267703)
               

               
               82-1318, gnl|Mm7|chr10 (17837497-17848205)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-1318, gnl|bosTau2|chr2 (70258232-70259461)
               

               
               82-1318, gnl|Hg17|chr6 (139283918-139267703)
               

               
               82-1318, gnl|Mm7|chr10 (17837497-17848205)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               lyg (1.06482)
               

               
               sag (0.730861)
               

               
               lin (0.582411)
               

               
               spc (0.566829)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               ski (0.29347)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.06482)
               

               
               sag (0.730861)
               

               
               lin (0.582411)
               

               
               spc (0.566829)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               ski (0.29347)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	82-1318, gnl\|bosTau2\|chr2 (70258232-70259461)
	82-1318, gnl\|Hg17\|chr6 (139283918-139267703)
	82-1318, gnl\|Mm7\|chr10 (17837497-17848205)

	lyg (1.06482)
	sag (0.730861)
	lin (0.582411)
	spc (0.566829)
	aor (0.390549)
	ret (0.3862)
	ski (0.29347)
	ova (0.258264)
	bla (0.248694)
	tra (0.246184)
	tes (0.207814)
	fcc (0.197785)
	nlu (0.191681)
	gul (0.177588)
	fty (0.17584)
	mga (0.160205)
	isp (0.150376)
	lnt (0.142308)
	pla (0.133672)
	sug (0.127291)
	ecc (0.115035)
	nbm (0.0993246)