Ss1.1-Pig4-TMW8068H16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGTGCCTGGAAATGTTACTTCAGAATGGCTACAGCCCTGATGCCCAGATGTGCCTTG TCTTTGGATTTACTTCTCCCATGTGTATGGCTTTCCAAAAGGACTGTGAGTTCTTGGGAA TTGTGAATATTCTTTTGAAATATGGAGCCCAGCTAAATGAACTCCATTTGGCATACTGCC TGAAATATGAGAAGTTTTCAGTATTTCGCTACTTTTTGAAGAAATGTTGCCCATTGACAC CATGGAGCCACATATCTGAATTTATACATCATGCAGTTAAAGCACAGACAAAATATAAAG AATGGTTGCCATCTCTCCTGCTTGCTGGATTTGACCCACTGAACCTACTCTGCAGTTCTT GGATTGACTCAGTTAGCGATGACGTCCTTATCTTTACTTTGGAATTTACTAATTGGAGGA GACTTCCTCCAGTCTGCAGTTCTTGGATTGACTCAGATAGCGATGACGTCCTTATCTTTA CTTTGGAATTTACTAATTGGAGGAGACTTCCTCCAGCTGTTGAAAAGATGCTCTCTGCTC GTGCTTCAAACTCCTCTTGGGCTCTGCAGCAACATATTGCCTCTGTTCCATCACTGACCC ACCTTTGTCGTTTGGAAATTCGGTCTAGTCTAAAACCAGAACACCTACGATGTGATAATT TTATCCATCAGTTGCCTCTTCCCAGAAGCCTACATGATTATTTGCTGTATGCAGAGGTTC TGAGGATGAATGAAATTCCAGAACTGGCAGTTATTCAAGATGAAGAAATCAGTGAAGCTA CTTAACACAGCTCATGTCTTGGTCTGAAAACCACTAAGACAAGGAGCCATGGAGTATAAA TTCTTCATGATTTCATGGTCACAAAAGATGATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGTGCCTGGAAATGTTACTTCAGAATGGCTACAGCCCTGATGCCCAGATGTGCCTTG TCTTTGGATTTACTTCTCCCATGTGTATGGCTTTCCAAAAGGACTGTGAGTTCTTGGGAA TTGTGAATATTCTTTTGAAATATGGAGCCCAGCTAAATGAACTCCATTTGGCATACTGCC TGAAATATGAGAAGTTTTCAGTATTTCGCTACTTTTTGAAGAAATGTTGCCCATTGACAC CATGGAGCCACATATCTGAATTTATACATCATGCAGTTAAAGCACAGACAAAATATAAAG AATGGTTGCCATCTCTCCTGCTTGCTGGATTTGACCCACTGAACCTACTCTGCAGTTCTT GGATTGACTCAGTTAGCGATGACGTCCTTATCTTTACTTTGGAATTTACTAATTGGAGGA GACTTCCTCCAGTCTGCAGTTCTTGGATTGACTCAGATAGCGATGACGTCCTTATCTTTA CTTTGGAATTTACTAATTGGAGGAGACTTCCTCCAGCTGTTGAAAAGATGCTCTCTGCTC GTGCTTCAAACTCCTCTTGGGCTCTGCAGCAACATATTGCCTCTGTTCCATCACTGACCC ACCTTTGTCGTTTGGAAATTCGGTCTAGTCTAAAACCAGAACACCTACGATGTGATAATT TTATCCATCAGTTGCCTCTTCCCAGAAGCCTACATGATTATTTGCTGTATGCAGAGGTTC TGAGGATGAATGAAATTCCAGAACTGGCAGTTATTCAAGATGAAGAAATCAGTGAAGCTA CTTAACACAGCTCATGTCTTGGTCTGAAAACCACTAAGACAAGGAGCCATGGAGTATAAA TTCTTCATGATTTCATGGTCACAAAAGATGATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 92-199, - strand, RNAz p=0.623323 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 92-199, - strand, RNAz p=0.623323 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 92-362, gnl|bosTau2|chr11 (25519493-25519222) | |
| 92-362, gnl|canFam2|chr10 (57873961-57874275) | |
| 92-362, gnl|echTel1|scaffold_300928 (8965-8652) | |
| 92-362, gnl|galGal2|chr3 (2965374-2965082) | |
| 92-362, gnl|hg17|chr2 (53839014-53839328) | |
| 92-362, gnl|Hg17|chr2 (53839329-53839058) | |
| 92-362, gnl|mm7|chr11 (31033658-31033360) | |
| 92-362, gnl|Mm7|chr11 (31033345-31033629) | |
| 92-362, gnl|monDom2|scaffold_1 (16191370-16191684) | |
| 92-362, gnl|oryCun1|scaffold_195383 (1782-1467) | |
| 92-362, gnl|panTro1|chr12 (55957002-55957317) | |
| 92-362, gnl|rheMac2|chr13 (53974740-53975054) | |
| 92-362, gnl|rn3|chr14 (112198580-112198267) | |
| 445-579, gnl|bosTau2|chr11 (25512756-25512622) | |
| 445-579, gnl|canFam2|chr10 (57868394-57868520) | |
| 445-579, gnl|danRer3|chr12 (19599304-19599430) | |
| 445-579, gnl|dasNov1|scaffold_41770 (2843-2717) | |
| 445-579, gnl|echTel1|scaffold_300928 (13980-13854) | |
| 445-579, gnl|hg17|chr2 (53832665-53832788) | |
| 445-579, gnl|Hg17|chr2 (53832803-53832672) | |
| 445-579, gnl|mm7|chr11 (31037146-31037023) | |
| 445-579, gnl|Mm7|chr11 (31037006-31037137) | |
| 445-579, gnl|monDom2|scaffold_1 (16184730-16184856) | |
| 445-579, gnl|panTro1|chr12 (55950380-55950503) | |
| 445-579, gnl|rheMac2|chr13 (53968498-53968621) | |
| 445-579, gnl|rn3|chr1 (45164099-45163986) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-362, gnl|bosTau2|chr11 (25519493-25519222) | |
| 92-362, gnl|canFam2|chr10 (57873961-57874275) | |
| 92-362, gnl|echTel1|scaffold_300928 (8965-8652) | |
| 92-362, gnl|galGal2|chr3 (2965374-2965082) | |
| 92-362, gnl|hg17|chr2 (53839014-53839328) | |
| 92-362, gnl|Hg17|chr2 (53839329-53839058) | |
| 92-362, gnl|mm7|chr11 (31033658-31033360) | |
| 92-362, gnl|Mm7|chr11 (31033345-31033629) | |
| 92-362, gnl|monDom2|scaffold_1 (16191370-16191684) | |
| 92-362, gnl|oryCun1|scaffold_195383 (1782-1467) | |
| 92-362, gnl|panTro1|chr12 (55957002-55957317) | |
| 92-362, gnl|rheMac2|chr13 (53974740-53975054) | |
| 92-362, gnl|rn3|chr14 (112198580-112198267) | |
| 445-579, gnl|bosTau2|chr11 (25512756-25512622) | |
| 445-579, gnl|canFam2|chr10 (57868394-57868520) | |
| 445-579, gnl|danRer3|chr12 (19599304-19599430) | |
| 445-579, gnl|dasNov1|scaffold_41770 (2843-2717) | |
| 445-579, gnl|echTel1|scaffold_300928 (13980-13854) | |
| 445-579, gnl|hg17|chr2 (53832665-53832788) | |
| 445-579, gnl|Hg17|chr2 (53832803-53832672) | |
| 445-579, gnl|mm7|chr11 (31037146-31037023) | |
| 445-579, gnl|Mm7|chr11 (31037006-31037137) | |
| 445-579, gnl|monDom2|scaffold_1 (16184730-16184856) | |
| 445-579, gnl|panTro1|chr12 (55950380-55950503) | |
| 445-579, gnl|rheMac2|chr13 (53968498-53968621) | |
| 445-579, gnl|rn3|chr1 (45164099-45163986) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.160205) | |
| pla (0.133672) | |
| eje (0.0988338) |