Ss1.1-Pig4-TMW8068J01.3
|
GAAGTAAATCGAGTTAGTCAGAGCATGAAGGGAAAAAGCAAAAGTAGTCATGACTTGCTT
AAGGATGATCCACATCTCAGCTCTGTTCCAGCTGTTGAAAGTGAGAAAGGGGATGCAGCA
GGAGATTCAGATGATGATGGAGAATATGAAAGTGCAGAGTATGATGGACACGTTGATGGT
GATGAGAAGAGCCTGATGAGAGAAAGAATTGCAAAAAAGTTAAAGAAGGACACAAGTGCA
AATGTTAAGACCTCCGAAGAGGGTGAAGTGGAAAAGAAATCAGTTAGCCGCAGTGAAGAG
CTCAGAAAAGAAGCAAGACAATTAAAGCGGGAACTCTTGGCAGCAAAACAAAAAAAACTA
GAAAATGCAGCAAAACAAGCAGAAAAAAATGAAGAGGAAATGGCTGCCCCAGATGGTGCT
ATTGCCGAATACAGAAGAGAAAAGCAAAAGTATGAAGCTTTGAGGAAGCAGCAGGCAAAG
AAGGGAACTTCCCGGGAAGACCAGACCCTTGCATTGCTGAACCAGTTTAAATCTAAACTC
ACTCAAGCAATTGCTGAAACTCCTGAAAATGACATTTCTGAAACTGAAGTAGAAGATGAT
GAAGGATGGATGTCGCATGTACTTCAGTTTGAGGATAAAAGCAGAAAAGTGAAAGACGCA
AGCATGCAAGACTCAGACACATTTGAAATCTATGATCCTCGGAATCCAGTGAATAAAAGA
AGAAGGGAAGAAAGCAAAAAGCTGATGAGAGAGAAAAAAGAAAGAAGATAAAATGGAGTA
ATGATAATCAGAACTAGCTGGAAATGTGCCTGCAATAAATGGCCTTATAACAGCCATTTT
TCCCAAAAGCATCACTTAAGGGTGTGAAAAGAACTCTTCTTGAACCTGTTGTCTGGTTTT
GAAAAACAATTATCTTGTTATGTAAATTATGGAATGACATACACAAATGCTTTTGGTCAC
TGGTACGTGTTTTTTTTTTCTAATTAACCTTTTATATTGCTAAATCTGAAATAAAATCAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGTAAATCGAGTTAGTCAGAGCATGAAGGGAAAAAGCAAAAGTAGTCATGACTTGCTT
AAGGATGATCCACATCTCAGCTCTGTTCCAGCTGTTGAAAGTGAGAAAGGGGATGCAGCA
GGAGATTCAGATGATGATGGAGAATATGAAAGTGCAGAGTATGATGGACACGTTGATGGT
GATGAGAAGAGCCTGATGAGAGAAAGAATTGCAAAAAAGTTAAAGAAGGACACAAGTGCA
AATGTTAAGACCTCCGAAGAGGGTGAAGTGGAAAAGAAATCAGTTAGCCGCAGTGAAGAG
CTCAGAAAAGAAGCAAGACAATTAAAGCGGGAACTCTTGGCAGCAAAACAAAAAAAACTA
GAAAATGCAGCAAAACAAGCAGAAAAAAATGAAGAGGAAATGGCTGCCCCAGATGGTGCT
ATTGCCGAATACAGAAGAGAAAAGCAAAAGTATGAAGCTTTGAGGAAGCAGCAGGCAAAG
AAGGGAACTTCCCGGGAAGACCAGACCCTTGCATTGCTGAACCAGTTTAAATCTAAACTC
ACTCAAGCAATTGCTGAAACTCCTGAAAATGACATTTCTGAAACTGAAGTAGAAGATGAT
GAAGGATGGATGTCGCATGTACTTCAGTTTGAGGATAAAAGCAGAAAAGTGAAAGACGCA
AGCATGCAAGACTCAGACACATTTGAAATCTATGATCCTCGGAATCCAGTGAATAAAAGA
AGAAGGGAAGAAAGCAAAAAGCTGATGAGAGAGAAAAAAGAAAGAAGATAAAATGGAGTA
ATGATAATCAGAACTAGCTGGAAATGTGCCTGCAATAAATGGCCTTATAACAGCCATTTT
TCCCAAAAGCATCACTTAAGGGTGTGAAAAGAACTCTTCTTGAACCTGTTGTCTGGTTTT
GAAAAACAATTATCTTGTTATGTAAATTATGGAATGACATACACAAATGCTTTTGGTCAC
TGGTACGTGTTTTTTTTTTCTAATTAACCTTTTATATTGCTAAATCTGAAATAAAATCAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
393-504, gnl|bosTau2|chr20 (9312003-9312114) |
|
393-504, gnl|canFam2|chr2 (53676902-53677018) |
|
393-504, gnl|dasNov1|scaffold_20935 (21034-20918) |
|
393-504, gnl|echTel1|scaffold_224005 (9023-9134) |
|
393-504, gnl|galGal2|chrZ (3591459-3591572) |
|
393-504, gnl|hg17|chr5 (64303280-64303396) |
|
393-504, gnl|Hg17|chr5 (64303284-64303395) |
|
393-504, gnl|mm7|chr13 (101799133-101799017) |
|
393-504, gnl|Mm7|chr13 (101799127-101799016) |
|
393-504, gnl|monDom2|scaffold_27 (30080613-30080729) |
|
393-504, gnl|oryCun1|scaffold_215292 (208394-208278) |
|
393-504, gnl|panTro1|chr4 (51641525-51641409) |
|
393-504, gnl|rheMac2|chr6 (62826027-62826143) |
|
393-504, gnl|rn3|chr2 (35523622-35523506) |
|
393-504, gnl|xenTro1|scaffold_597 (640679-640563) |
| |
|
608-1020, gnl|bosTau2|chr20 (9353599-9354016) |
|
608-1020, gnl|Hg17|chr5 (64349741-64350149) |
|
608-1020, gnl|Mm7|chr13 (101769448-101769057) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
393-504, gnl|bosTau2|chr20 (9312003-9312114) |
|
393-504, gnl|canFam2|chr2 (53676902-53677018) |
|
393-504, gnl|dasNov1|scaffold_20935 (21034-20918) |
|
393-504, gnl|echTel1|scaffold_224005 (9023-9134) |
|
393-504, gnl|galGal2|chrZ (3591459-3591572) |
|
393-504, gnl|hg17|chr5 (64303280-64303396) |
|
393-504, gnl|Hg17|chr5 (64303284-64303395) |
|
393-504, gnl|mm7|chr13 (101799133-101799017) |
|
393-504, gnl|Mm7|chr13 (101799127-101799016) |
|
393-504, gnl|monDom2|scaffold_27 (30080613-30080729) |
|
393-504, gnl|oryCun1|scaffold_215292 (208394-208278) |
|
393-504, gnl|panTro1|chr4 (51641525-51641409) |
|
393-504, gnl|rheMac2|chr6 (62826027-62826143) |
|
393-504, gnl|rn3|chr2 (35523622-35523506) |
|
393-504, gnl|xenTro1|scaffold_597 (640679-640563) |
| |
|
608-1020, gnl|bosTau2|chr20 (9353599-9354016) |
|
608-1020, gnl|Hg17|chr5 (64349741-64350149) |
|
608-1020, gnl|Mm7|chr13 (101769448-101769057) |
|
spc (0.340097) |
|
cte (0.29274) |
|
tes (0.207814) |
|
sin (0.174948) |
|
fat (0.147427) |
|
ski (0.146735) |
|
kid (0.129735) |
|
sug (0.127291) |
|
spc (0.340097) |
|
cte (0.29274) |
|
tes (0.207814) |
|
sin (0.174948) |
|
fat (0.147427) |
|
ski (0.146735) |
|
kid (0.129735) |
|
sug (0.127291) |
