Non-Coding RNA Search

Ss1.1-Pig4-TMW8068J06.3.5

Sequence:


               
               TGTAATATTTATTAATACCTTTTGTCTTTGGCATTGAGTCTCTCCTGTTGTATTATCGCG
GGCCCAGAGAAAATGTTGACGGCCCTTTAAGCACATGTACAGCAGGCAGCAGGGGTCAGA
TATAACCCTGTGGTAGTGACACCAGCAAACTGGCATTTGAATCAAGCCTGGGACCATTTG
AGTGCACGGCCTCCTGTCCGGCATGGAAGGGGCCAATTTGAACCAGCCTTAGTTACATTT
GATTAAAGAAAAAGAAAACAAACAAACAAGAGACTCAGGGAAAGTACTAAACCAAAATCT
CTGATTTAACTTTTGTGTTTTCCATAGTTTTTATCTTGTATTATTGAAATACTTTTATAA
AGGAAAATGGTACTGTGACAATTCAATAATTCTACACATTTCTTACTGTTTCTCCATCAT
GGCCTTTTATTTCCCAAGGTTCTGTGATTATGATTTTATACCAGTTTAATCTCAAATGTT
GTTTAACTGCTTTAAATTTATATAGGCATTGTAAACTGCAGAGAAAAACGAGAAATGTGT
TTTCACAGGATCTATATTGTGAACTAAACTAAGCCTACCTTTTTGTAACTTCCTTGTTGA
TGTGTTGGTGACAAATATATGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAATATTTATTAATACCTTTTGTCTTTGGCATTGAGTCTCTCCTGTTGTATTATCGCG
GGCCCAGAGAAAATGTTGACGGCCCTTTAAGCACATGTACAGCAGGCAGCAGGGGTCAGA
TATAACCCTGTGGTAGTGACACCAGCAAACTGGCATTTGAATCAAGCCTGGGACCATTTG
AGTGCACGGCCTCCTGTCCGGCATGGAAGGGGCCAATTTGAACCAGCCTTAGTTACATTT
GATTAAAGAAAAAGAAAACAAACAAACAAGAGACTCAGGGAAAGTACTAAACCAAAATCT
CTGATTTAACTTTTGTGTTTTCCATAGTTTTTATCTTGTATTATTGAAATACTTTTATAA
AGGAAAATGGTACTGTGACAATTCAATAATTCTACACATTTCTTACTGTTTCTCCATCAT
GGCCTTTTATTTCCCAAGGTTCTGTGATTATGATTTTATACCAGTTTAATCTCAAATGTT
GTTTAACTGCTTTAAATTTATATAGGCATTGTAAACTGCAGAGAAAAACGAGAAATGTGT
TTTCACAGGATCTATATTGTGAACTAAACTAAGCCTACCTTTTTGTAACTTCCTTGTTGA
TGTGTTGGTGACAAATATATGTAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               33-198, gnl|bosTau2|chr6 (35376940-35377103)
               

               
               33-198, gnl|Hg17|chr4 (57101075-57100915)
               

               
               33-198, gnl|Mm7|chr5 (76845445-76845291)
               


               
               217-624, gnl|bosTau2|chr6 (35377155-35377561)
               

               
               217-624, gnl|Hg17|chr4 (57100863-57100470)
               

               
               217-624, gnl|Mm7|chr5 (76845235-76844825)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-198, gnl|bosTau2|chr6 (35376940-35377103)
               

               
               33-198, gnl|Hg17|chr4 (57101075-57100915)
               

               
               33-198, gnl|Mm7|chr5 (76845445-76845291)
               


               
               217-624, gnl|bosTau2|chr6 (35377155-35377561)
               

               
               217-624, gnl|Hg17|chr4 (57100863-57100470)
               

               
               217-624, gnl|Mm7|chr5 (76845235-76844825)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               cki (0.165235)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               cki (0.165235)
               

               
               thg (0.126791)

	33-198, gnl\|bosTau2\|chr6 (35376940-35377103)
	33-198, gnl\|Hg17\|chr4 (57101075-57100915)
	33-198, gnl\|Mm7\|chr5 (76845445-76845291)

	217-624, gnl\|bosTau2\|chr6 (35377155-35377561)
	217-624, gnl\|Hg17\|chr4 (57100863-57100470)
	217-624, gnl\|Mm7\|chr5 (76845235-76844825)