Ss1.1-Pig4-TMW8068K01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGAATGGGGCAGCACCAAAACAGGAGAACAGGATGGCTTGATTGGCACAGCGATGAAC TGTGTGCTTCAGGTTCCAAAGTACCTACCTCAGGAGCAGAGATTTGATATTCGAGTGCTG GGTTTGGGTCTACTGATAAATCTAGTGGAGTATAGTGCTCGGAATCGGCACTGTCTTGTC AACATGGAGACATCATGTTCTTTTGATTCTTCCTTCTGTAGTGGAGAAGGAGATGATAGT TTAAGGATAGCTGGACAAGTTCATGCAGTTCAGGCTCTAGTGCAGCTATTCCTTGAGCGA GAACGAGCAGCACAGTTGGCAGAAAGTAAAACAGATGAGTTGATCAAAGATGCTCCCACC ACTCAGCATGATAAGAGTGGAGAGTGGCAAGAAACAAGTGGAGAAATACAGTGGGTAGCA ACTGAAAAAACCGATGGTACAGAAGAGAAACATAAGAAGGAGGAGGATGATGAAGAACTT GACCTCAATAAAGCCCTTCAGCATGCTGGCAAACACATGGAGGATTGCATCGTGGCCTCA TACACAGCGCTACTTCTCGGGTGTCTCTGCCAGGAGAGTCCTATCAATGTGACCACTGTG GCGGGAGTATCTGCCAGAAGGGGACTTTTCAATAATGACAGAGATGCTCAAAAAATTTCT GAGCTTCATGAATCTTACCTGTGCTGTTGGAACCACAGGCCAGAAATCTATCTCTAGAGT GATTGAATACTTGGAACATTGCTAGCTGCTTTACCTTTGCTTCAGGTGCTCGGCAAAGCT GGAGCTATTCTTAGACAAAGAAAAGTCACGAAAGAAGTCCTTGAAGATATACCAAGAACA TTCATCAGTATCATTCATATTTGGATTTTAAGGCCACCTGATTTCTTCTTCGTCATGCAT TCTGCATTTGCTAAATGACAGTTACTACATCAATCTGCAACTATCAAAAATGAGGGAAAA GGTTCAGGCTGTTAACATTTCCATGCAGTATTTAAATACACTTACTTTGGCAGAATTTAT ACTATCCCCTTGTTCTCTTGCTTTATTCTGGGCAAGTTTTAAGGGGAAAATTTGTGCTGC TGTTAGTGCAACTGCTGTGTATGTTGAGCCACTGTTGTCATGCCAGCCAGGTGCAAAGGC AGCTTAGCTACTGAGGTATTGAATGTTCTGAGGACATTCTAGACAACAGCTTAGTTCCTT TTTCAGGCTCATTTGCTTTTGCTTTTTTGTTGAATGATTCCAATCGTAAATAAAGCTTTT AATAATTTTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGAATGGGGCAGCACCAAAACAGGAGAACAGGATGGCTTGATTGGCACAGCGATGAAC TGTGTGCTTCAGGTTCCAAAGTACCTACCTCAGGAGCAGAGATTTGATATTCGAGTGCTG GGTTTGGGTCTACTGATAAATCTAGTGGAGTATAGTGCTCGGAATCGGCACTGTCTTGTC AACATGGAGACATCATGTTCTTTTGATTCTTCCTTCTGTAGTGGAGAAGGAGATGATAGT TTAAGGATAGCTGGACAAGTTCATGCAGTTCAGGCTCTAGTGCAGCTATTCCTTGAGCGA GAACGAGCAGCACAGTTGGCAGAAAGTAAAACAGATGAGTTGATCAAAGATGCTCCCACC ACTCAGCATGATAAGAGTGGAGAGTGGCAAGAAACAAGTGGAGAAATACAGTGGGTAGCA ACTGAAAAAACCGATGGTACAGAAGAGAAACATAAGAAGGAGGAGGATGATGAAGAACTT GACCTCAATAAAGCCCTTCAGCATGCTGGCAAACACATGGAGGATTGCATCGTGGCCTCA TACACAGCGCTACTTCTCGGGTGTCTCTGCCAGGAGAGTCCTATCAATGTGACCACTGTG GCGGGAGTATCTGCCAGAAGGGGACTTTTCAATAATGACAGAGATGCTCAAAAAATTTCT GAGCTTCATGAATCTTACCTGTGCTGTTGGAACCACAGGCCAGAAATCTATCTCTAGAGT GATTGAATACTTGGAACATTGCTAGCTGCTTTACCTTTGCTTCAGGTGCTCGGCAAAGCT GGAGCTATTCTTAGACAAAGAAAAGTCACGAAAGAAGTCCTTGAAGATATACCAAGAACA TTCATCAGTATCATTCATATTTGGATTTTAAGGCCACCTGATTTCTTCTTCGTCATGCAT TCTGCATTTGCTAAATGACAGTTACTACATCAATCTGCAACTATCAAAAATGAGGGAAAA GGTTCAGGCTGTTAACATTTCCATGCAGTATTTAAATACACTTACTTTGGCAGAATTTAT ACTATCCCCTTGTTCTCTTGCTTTATTCTGGGCAAGTTTTAAGGGGAAAATTTGTGCTGC TGTTAGTGCAACTGCTGTGTATGTTGAGCCACTGTTGTCATGCCAGCCAGGTGCAAAGGC AGCTTAGCTACTGAGGTATTGAATGTTCTGAGGACATTCTAGACAACAGCTTAGTTCCTT TTTCAGGCTCATTTGCTTTTGCTTTTTTGTTGAATGATTCCAATCGTAAATAAAGCTTTT AATAATTTTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 322-441, + strand, RNAz p=0.911512 | |
| 988-1226, + strand, RNAz p=0.995657 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 322-441, + strand, RNAz p=0.911512 | |
| 988-1226, + strand, RNAz p=0.995657 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF479418, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 4-121, gnl|bosTau2|chr28 (30935642-30935759) | |
| 4-121, gnl|canFam2|chr4 (37423670-37423819) | |
| 4-121, gnl|danRer3|chr17 (1058453-1058586) | |
| 4-121, gnl|echTel1|scaffold_308439 (41319-41461) | |
| 4-121, gnl|fr1|chrUn (291394753-291394888) | |
| 4-121, gnl|galGal2|chr6 (1724475-1724616) | |
| 4-121, gnl|hg17|chr10 (88202951-88203092) | |
| 4-121, gnl|Hg17|chr10 (88203073-88202956) | |
| 4-121, gnl|loxAfr1|scaffold_152555 (855-713) | |
| 4-121, gnl|mm7|chr14 (32168970-32168834) | |
| 4-121, gnl|Mm7|chr14 (32168846-32168963) | |
| 4-121, gnl|monDom2|scaffold_41 (15065828-15065966) | |
| 4-121, gnl|oryCun1|scaffold_205087 (41050-41191) | |
| 4-121, gnl|panTro1|chr8 (89822640-89822779) | |
| 4-121, gnl|rheMac2|chr9 (50816729-50816588) | |
| 4-121, gnl|rn3|chr16 (10399867-10399731) | |
| 4-121, gnl|tetNig1|chrUn_random (9518417-9518282) | |
| 4-121, gnl|xenTro1|scaffold_639 (719652-719793) | |
| 283-493, gnl|bosTau2|chr28 (30938478-30938688) | |
| 283-493, gnl|canFam2|chr4 (37419874-37420056) | |
| 283-493, gnl|danRer3|chr17 (1054705-1054876) | |
| 283-493, gnl|dasNov1|scaffold_13350 (51624-51806) | |
| 283-493, gnl|echTel1|scaffold_308439 (36127-36310) | |
| 283-493, gnl|fr1|chrUn (291393684-291393860) | |
| 283-493, gnl|galGal2|chr6 (1722687-1722869) | |
| 283-493, gnl|hg17|chr10 (88195972-88196154) | |
| 283-493, gnl|Hg17|chr10 (88196189-88195979) | |
| 283-493, gnl|mm7|chr14 (32171023-32170841) | |
| 283-493, gnl|Mm7|chr14 (32170804-32171014) | |
| 283-493, gnl|monDom2|scaffold_41 (15061299-15061481) | |
| 283-493, gnl|oryCun1|scaffold_205087 (36602-36784) | |
| 283-493, gnl|panTro1|chr8 (89815694-89815876) | |
| 283-493, gnl|rheMac2|chr9 (50824252-50824070) | |
| 283-493, gnl|rn3|chr16 (10401498-10401316) | |
| 283-493, gnl|tetNig1|chrUn_random (9519368-9519198) | |
| 283-493, gnl|xenTro1|scaffold_639 (713155-713340) | |
| 680-1272, gnl|bosTau2|chr28 (30943292-30943880) | |
| 680-1272, gnl|Hg17|chr10 (88187345-88186749) | |
| 680-1272, gnl|Mm7|chr14 (32177202-32177794) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-121, gnl|bosTau2|chr28 (30935642-30935759) | |
| 4-121, gnl|canFam2|chr4 (37423670-37423819) | |
| 4-121, gnl|danRer3|chr17 (1058453-1058586) | |
| 4-121, gnl|echTel1|scaffold_308439 (41319-41461) | |
| 4-121, gnl|fr1|chrUn (291394753-291394888) | |
| 4-121, gnl|galGal2|chr6 (1724475-1724616) | |
| 4-121, gnl|hg17|chr10 (88202951-88203092) | |
| 4-121, gnl|Hg17|chr10 (88203073-88202956) | |
| 4-121, gnl|loxAfr1|scaffold_152555 (855-713) | |
| 4-121, gnl|mm7|chr14 (32168970-32168834) | |
| 4-121, gnl|Mm7|chr14 (32168846-32168963) | |
| 4-121, gnl|monDom2|scaffold_41 (15065828-15065966) | |
| 4-121, gnl|oryCun1|scaffold_205087 (41050-41191) | |
| 4-121, gnl|panTro1|chr8 (89822640-89822779) | |
| 4-121, gnl|rheMac2|chr9 (50816729-50816588) | |
| 4-121, gnl|rn3|chr16 (10399867-10399731) | |
| 4-121, gnl|tetNig1|chrUn_random (9518417-9518282) | |
| 4-121, gnl|xenTro1|scaffold_639 (719652-719793) | |
| 283-493, gnl|bosTau2|chr28 (30938478-30938688) | |
| 283-493, gnl|canFam2|chr4 (37419874-37420056) | |
| 283-493, gnl|danRer3|chr17 (1054705-1054876) | |
| 283-493, gnl|dasNov1|scaffold_13350 (51624-51806) | |
| 283-493, gnl|echTel1|scaffold_308439 (36127-36310) | |
| 283-493, gnl|fr1|chrUn (291393684-291393860) | |
| 283-493, gnl|galGal2|chr6 (1722687-1722869) | |
| 283-493, gnl|hg17|chr10 (88195972-88196154) | |
| 283-493, gnl|Hg17|chr10 (88196189-88195979) | |
| 283-493, gnl|mm7|chr14 (32171023-32170841) | |
| 283-493, gnl|Mm7|chr14 (32170804-32171014) | |
| 283-493, gnl|monDom2|scaffold_41 (15061299-15061481) | |
| 283-493, gnl|oryCun1|scaffold_205087 (36602-36784) | |
| 283-493, gnl|panTro1|chr8 (89815694-89815876) | |
| 283-493, gnl|rheMac2|chr9 (50824252-50824070) | |
| 283-493, gnl|rn3|chr16 (10401498-10401316) | |
| 283-493, gnl|tetNig1|chrUn_random (9519368-9519198) | |
| 283-493, gnl|xenTro1|scaffold_639 (713155-713340) | |
| 680-1272, gnl|bosTau2|chr28 (30943292-30943880) | |
| 680-1272, gnl|Hg17|chr10 (88187345-88186749) | |
| 680-1272, gnl|Mm7|chr14 (32177202-32177794) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fat (0.294855) | |
| ova (0.258264) | |
| tes (0.207814) | |
| col (0.195008) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| pla (0.133672) | |
| nbm (0.0993246) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.294855) | |
| ova (0.258264) | |
| tes (0.207814) | |
| col (0.195008) | |
| fbs (0.175346) | |
| eli (0.151814) | |
| pla (0.133672) | |
| nbm (0.0993246) |