Non-Coding RNA Search

Ss1.1-Pig4-TMW8068K09.3

Sequence:


               
               CCCGTGCCCAGCATTTGGCTTTCGTGCCAGATTCTCGGAGGCCGAGGGGTTTAGCAAGGC
CCCTGCACCCCTCTTGGCTCCGGAAGCAGCCGTCGGGAGCAGATACCAGTGCCGGCTGCA
GGCGCTAAATTTCTGCATGGGAACTGACCCGGGCTTTGAGCACCTCTTGGCCTCAGCAGC
CCCCTCCCCTGCACCACCCACCCCTCCAGCCTCACTCCGGGCCCCGCTGCCTCTGCCAGC
TGACCCCAAGGAACCTTGGGTTGCAGGCAGCTTCCCCGTCCAGGGAGGCTCGGGCTACCC
TTTGGGGCTGACCCCCTGCCTATACCGGACGCCAGGAATGTTCTTCTTTGAATGAAGCCA
GCCGACCTCGGGCTGTCCCCCGCCAACTGCACCCTCCAGGCCGAGCCTGATTCTAGGATC
TGGGGAGCTCTCAGAGGACGCAGGCCTGGCAAGCCAACAACACCTGGGACAGGAAGCCGA
GATTGGAGTGGTGACCCCTCAGCCAACCCCCAGGGCCTCGGGACAGACTTGGGGGTGAGG
GGAAGCAGGGCCCCATTGGGACGTACTCTGTGGCTCTCGGGGCCAATAAAGCCAGTGTGA
TGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGTGCCCAGCATTTGGCTTTCGTGCCAGATTCTCGGAGGCCGAGGGGTTTAGCAAGGC
CCCTGCACCCCTCTTGGCTCCGGAAGCAGCCGTCGGGAGCAGATACCAGTGCCGGCTGCA
GGCGCTAAATTTCTGCATGGGAACTGACCCGGGCTTTGAGCACCTCTTGGCCTCAGCAGC
CCCCTCCCCTGCACCACCCACCCCTCCAGCCTCACTCCGGGCCCCGCTGCCTCTGCCAGC
TGACCCCAAGGAACCTTGGGTTGCAGGCAGCTTCCCCGTCCAGGGAGGCTCGGGCTACCC
TTTGGGGCTGACCCCCTGCCTATACCGGACGCCAGGAATGTTCTTCTTTGAATGAAGCCA
GCCGACCTCGGGCTGTCCCCCGCCAACTGCACCCTCCAGGCCGAGCCTGATTCTAGGATC
TGGGGAGCTCTCAGAGGACGCAGGCCTGGCAAGCCAACAACACCTGGGACAGGAAGCCGA
GATTGGAGTGGTGACCCCTCAGCCAACCCCCAGGGCCTCGGGACAGACTTGGGGGTGAGG
GGAAGCAGGGCCCCATTGGGACGTACTCTGTGGCTCTCGGGGCCAATAAAGCCAGTGTGA
TGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-361, - strand, RNAz p=0.983792

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-361, - strand, RNAz p=0.983792

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               113-299, - strand, RNAmicro p=0.999628

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               113-299, - strand, RNAmicro p=0.999628

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-606, gnl|bosTau2|chr13 (44051333-44050720)
               

               
               3-606, gnl|Hg17|chr20 (29896366-29895767)
               

               
               3-606, gnl|Mm7|chr2 (152673348-152672751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-606, gnl|bosTau2|chr13 (44051333-44050720)
               

               
               3-606, gnl|Hg17|chr20 (29896366-29895767)
               

               
               3-606, gnl|Mm7|chr2 (152673348-152672751)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	3-606, gnl\|bosTau2\|chr13 (44051333-44050720)
	3-606, gnl\|Hg17\|chr20 (29896366-29895767)
	3-606, gnl\|Mm7\|chr2 (152673348-152672751)