Non-Coding RNA Search

Ss1.1-Pig4-TMW8068K13.3

Sequence:


               
               CCACTTTCCTTCCCTGCGCGCGCGGAGGCGACCTAAGTAACCGTGGCTAGTGAGGCGAAG
AGCGGCCGAGCTGGAGCCAATCAGCTGCGGGAAGGGGCGGGACTTCCTGCGCGGAGGCCG
GAGCCGTTCGGTCTCCCCGCTCTCCGTGGTCCCGGCTCTGGGCTAGCGGCGGCGGCTGCG
TCTCCGTGAGGAGGCGCGCGGGGCCATGACGTCAGCGTCCACAAAGGTCGGAGAGATCTT
CTCCGCGGCGGGCGCCGCCTTCACGAAGCTCGGGGAGCTGACCATGCAGCTGCATCCCGT
GGCCGACTCATCCCCGGCGGGTGCCAAGTGGACGGAGACGGAGATAGAGATGCTGAGGGC
TGCTGTGAAGCGATTTGGGGACGATCTTAATCACATCAGCTGTGTCATCAAGGAACGGAC
AGTGGCTCAGATAAAGGCCACGGTGAAGCGCAAGGTATACGAAGACTCCGGCATCCCCCT
TCCGGCTGATTCGCCCAAGAAAGGGCCCAAGAAGGTGGCATCTGGCGTCTTGTCGCCTCC
TCCGGCTGCCCCTCCACCAAGCAGCTCCAGTGCCCCCGAGGCCGGGGGTCCCCCCCTAAA
GAAACAGAAGGCTGATGTGACACTCAGTGCTCTGAACGACTCCGACGCCAACAGTGACCT
GGTGGACATTGAAGGGCTGGGAGAGACTCCTCCGGCCAAGAAACTCAACTTCGACCAGGC
CTGACCCTGGATTCTGGCCTTCTTCTGACCTCTGCTGATCCTCCTCTGCTCTCTTGCTGA
GCCTGCCACCTCTGACCCCTGTCACTGTTCACCCTGGACCTGTGGACCGCCTGGGACTCT
GAGCAAGGCCTGCCTGAGAGAGGGCAGAAAGGCCGCCGGGGCGGCCCAGCTTGCTGTTCC
TGTATGAGCATCCGGCCCCGACCCCTCGGATCCCCCGTCTGATGGACATTTTTATACAGA
AAACAATAAAGATCTCCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTTTCCTTCCCTGCGCGCGCGGAGGCGACCTAAGTAACCGTGGCTAGTGAGGCGAAG
AGCGGCCGAGCTGGAGCCAATCAGCTGCGGGAAGGGGCGGGACTTCCTGCGCGGAGGCCG
GAGCCGTTCGGTCTCCCCGCTCTCCGTGGTCCCGGCTCTGGGCTAGCGGCGGCGGCTGCG
TCTCCGTGAGGAGGCGCGCGGGGCCATGACGTCAGCGTCCACAAAGGTCGGAGAGATCTT
CTCCGCGGCGGGCGCCGCCTTCACGAAGCTCGGGGAGCTGACCATGCAGCTGCATCCCGT
GGCCGACTCATCCCCGGCGGGTGCCAAGTGGACGGAGACGGAGATAGAGATGCTGAGGGC
TGCTGTGAAGCGATTTGGGGACGATCTTAATCACATCAGCTGTGTCATCAAGGAACGGAC
AGTGGCTCAGATAAAGGCCACGGTGAAGCGCAAGGTATACGAAGACTCCGGCATCCCCCT
TCCGGCTGATTCGCCCAAGAAAGGGCCCAAGAAGGTGGCATCTGGCGTCTTGTCGCCTCC
TCCGGCTGCCCCTCCACCAAGCAGCTCCAGTGCCCCCGAGGCCGGGGGTCCCCCCCTAAA
GAAACAGAAGGCTGATGTGACACTCAGTGCTCTGAACGACTCCGACGCCAACAGTGACCT
GGTGGACATTGAAGGGCTGGGAGAGACTCCTCCGGCCAAGAAACTCAACTTCGACCAGGC
CTGACCCTGGATTCTGGCCTTCTTCTGACCTCTGCTGATCCTCCTCTGCTCTCTTGCTGA
GCCTGCCACCTCTGACCCCTGTCACTGTTCACCCTGGACCTGTGGACCGCCTGGGACTCT
GAGCAAGGCCTGCCTGAGAGAGGGCAGAAAGGCCGCCGGGGCGGCCCAGCTTGCTGTTCC
TGTATGAGCATCCGGCCCCGACCCCTCGGATCCCCCGTCTGATGGACATTTTTATACAGA
AAACAATAAAGATCTCCCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IXM2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IXM2_HUMAN

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-228, gnl|bosTau2|chr19 (14659193-14659417)
               

               
               1-228, gnl|Hg17|chr17 (6858702-6858923)
               

               
               1-228, gnl|Mm7|chr11 (70319571-70319356)
               


               
               424-617, gnl|bosTau2|chr19 (14661117-14661310)
               

               
               424-617, gnl|Hg17|chr17 (6860538-6860731)
               

               
               424-617, gnl|Mm7|chr11 (70317785-70317595)
               


               
               719-983, gnl|bosTau2|chr19 (14661846-14662114)
               

               
               719-983, gnl|Hg17|chr17 (6861303-6861563)
               

               
               719-983, gnl|Mm7|chr11 (70317039-70316781)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-228, gnl|bosTau2|chr19 (14659193-14659417)
               

               
               1-228, gnl|Hg17|chr17 (6858702-6858923)
               

               
               1-228, gnl|Mm7|chr11 (70319571-70319356)
               


               
               424-617, gnl|bosTau2|chr19 (14661117-14661310)
               

               
               424-617, gnl|Hg17|chr17 (6860538-6860731)
               

               
               424-617, gnl|Mm7|chr11 (70317785-70317595)
               


               
               719-983, gnl|bosTau2|chr19 (14661846-14662114)
               

               
               719-983, gnl|Hg17|chr17 (6861303-6861563)
               

               
               719-983, gnl|Mm7|chr11 (70317039-70316781)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ese (0.632511)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.632511)
               

               
               pla (0.401016)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-228, gnl\|bosTau2\|chr19 (14659193-14659417)
	1-228, gnl\|Hg17\|chr17 (6858702-6858923)
	1-228, gnl\|Mm7\|chr11 (70319571-70319356)

	424-617, gnl\|bosTau2\|chr19 (14661117-14661310)
	424-617, gnl\|Hg17\|chr17 (6860538-6860731)
	424-617, gnl\|Mm7\|chr11 (70317785-70317595)

	719-983, gnl\|bosTau2\|chr19 (14661846-14662114)
	719-983, gnl\|Hg17\|chr17 (6861303-6861563)
	719-983, gnl\|Mm7\|chr11 (70317039-70316781)

	ese (0.632511)
	pla (0.401016)
	elu (0.385356)
	cag (0.302389)
	nlu (0.191681)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	csp (0.161186)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)