Non-Coding RNA Search

Ss1.1-Pig4-TMW8068K14.3

Sequence:


               
               GGTTCCCTGCACAGGTCTATGTTCTGGACTTGGGCAGTGGAGGATTCACCCGTAACTCAG
TTTGGAGGAGTCAGATAGTGGTTCTGGTGGGGAGAGCAGCAAGGTGAGAAATAAGACCTT
GGGATGGGCAGTTGATGTGGGTCAGCATGCTGGAAAGGCAGCCTTTCCTAATCCCACGGT
GAACTCATGCTCTCTTCTTCCCACTGCATAGTTCTGTGATTGAACCTGTCTGAAGTTAAT
CATGAAACAGGTGAAATACCTGGCAAAGTTCTTCGTGTGGAGTAATGACTCAGTAAATCA
GTGGTCAACAAAATGCATGTGAATCTTAAAAAATAAAATAAACATCCACTTTCTCCAGAA
GAATTCAAATTTGGTAATGTGGCTGGGGGAGAGTGGCCAGGTTTCTTTGTGTTTTTCAGC
TCCAGAGGATTCTGATGTGTAGTAGCTGGGATCAAGAACAGTAAATGTTAATCCCCTTTT
CTTCTAAGCTGGGAGAGCAGGGCTTTGTCCACTCTTGATTTCATGGTGGAAGAACAAGGT
TGTGGATTTAGTCAGTGGTTCAGTATCAGAGATACGGGGAAAACCAGTGGAATTGTTTTT
TTCCTCCACTTACTGTGGTGTTAAGAGTTCACATGACAGACTTCCTATTGATTTTCTCCC
TAGAGTGAATTCTGGGTCTGTCATGGGACTTGCTGCTTTCCCAAGTGTAAAAGATCTAGA
TTCTAGAAGAGGCTTGTTGAAACACCAGGAAAGCACTGGTTAAATATAATCTTTGTACTT
TAGACTTGTGTTCTTATCGCATCTCAGCCTGATACGAGGCAGCAGTTTCAGAAAGTATTT
CACTTCTTTTGTATCTCCGTGTGTAACAGACGAGTTCTCAAGTGTTGGGGCAGGGACAGT
GCTGGTGCAGATTCATTATCAAACGTTTAGACTAAGATCTTCATGAAGCTCTGTTTTTGT
CCACATACATAGAGTATAATTGAGGGGAAAAAAAGGCAGAGGAGGTCTATACAAAACTAA
AAATGAGAGTGGGGTGATAAGAGGAAACTTAAGAGTGTTTTGCTTCACTATGCAAATAAA
TCTTAACACTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCCCTGCACAGGTCTATGTTCTGGACTTGGGCAGTGGAGGATTCACCCGTAACTCAG
TTTGGAGGAGTCAGATAGTGGTTCTGGTGGGGAGAGCAGCAAGGTGAGAAATAAGACCTT
GGGATGGGCAGTTGATGTGGGTCAGCATGCTGGAAAGGCAGCCTTTCCTAATCCCACGGT
GAACTCATGCTCTCTTCTTCCCACTGCATAGTTCTGTGATTGAACCTGTCTGAAGTTAAT
CATGAAACAGGTGAAATACCTGGCAAAGTTCTTCGTGTGGAGTAATGACTCAGTAAATCA
GTGGTCAACAAAATGCATGTGAATCTTAAAAAATAAAATAAACATCCACTTTCTCCAGAA
GAATTCAAATTTGGTAATGTGGCTGGGGGAGAGTGGCCAGGTTTCTTTGTGTTTTTCAGC
TCCAGAGGATTCTGATGTGTAGTAGCTGGGATCAAGAACAGTAAATGTTAATCCCCTTTT
CTTCTAAGCTGGGAGAGCAGGGCTTTGTCCACTCTTGATTTCATGGTGGAAGAACAAGGT
TGTGGATTTAGTCAGTGGTTCAGTATCAGAGATACGGGGAAAACCAGTGGAATTGTTTTT
TTCCTCCACTTACTGTGGTGTTAAGAGTTCACATGACAGACTTCCTATTGATTTTCTCCC
TAGAGTGAATTCTGGGTCTGTCATGGGACTTGCTGCTTTCCCAAGTGTAAAAGATCTAGA
TTCTAGAAGAGGCTTGTTGAAACACCAGGAAAGCACTGGTTAAATATAATCTTTGTACTT
TAGACTTGTGTTCTTATCGCATCTCAGCCTGATACGAGGCAGCAGTTTCAGAAAGTATTT
CACTTCTTTTGTATCTCCGTGTGTAACAGACGAGTTCTCAAGTGTTGGGGCAGGGACAGT
GCTGGTGCAGATTCATTATCAAACGTTTAGACTAAGATCTTCATGAAGCTCTGTTTTTGT
CCACATACATAGAGTATAATTGAGGGGAAAAAAAGGCAGAGGAGGTCTATACAAAACTAA
AAATGAGAGTGGGGTGATAAGAGGAAACTTAAGAGTGTTTTGCTTCACTATGCAAATAAA
TCTTAACACTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               150-569, gnl|bosTau2|chr23 (14339778-14340203)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-569, gnl|bosTau2|chr23 (14339778-14340203)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               ret (0.3862)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               spc (0.453463)
               

               
               ret (0.3862)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	pro (0.512033)
	tbr (0.462535)
	spc (0.453463)
	ret (0.3862)
	cbe (0.239234)
	fcc (0.197785)
	fhi (0.169578)
	cag (0.151194)
	liv (0.146284)
	spl (0.143184)
	ebs (0.118301)
	nbm (0.0993246)