Ss1.1-Pig4-TMW8068L04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTGGGTAAATAATAGTTTTAATGTGTAACAGCAGGCCAACTGGGGAAGA CCTCGCCCCCCAAGGCCCCAGCCCTTTTCCCATGACGCCCTGGGACCTGTGTGTGGGCCA GCCCTGTGCCTGCCCAGCACCAAGGCCCACAAGCCCCAGGGAAGGGTGAGAAAAGAAGAC GGGCGCAGCTGAGAGGACTCAGACCCAAGAGTTCTGGGAGGCGAATGCAGGGGCTAGTTG AATTTGGCCTTGGAAAAATCCATCTCTGGATGCTGATCCATGAACTTCTTCAGAATCTCC TGTTTCTTCTGCTCATCCGAAGTGGGCAGCCCCATGGACTTCTGTCTCTGGTCGTACATC ATCTTCTCCACCATGCTGCGGGTCTCACTGTCCAGGTCTGACAGCTTGGAGTTCTCAGGG TTGATCTTCTTGGTATTGATCTCAGGGTCACTGGACACCAAGCGGCTCCACCACTCCATC TTGTTGATCTTCTCCAGGTGCACTGTGACCACCTTGCCATCCTCAATGAGCCACGAGCTC TCCTCCACCTTCACCTCGTTGTAGAGCTCGCCTTCGATGACCGCCGGCTGGCCCTTGAGC CCCACCCGGATGTGCCTCCGCTGGATGTCCACCACCACGTCCTTCCCCTTAAGCCGGAAG TTCACACGGAAGGGCACTGCCAGATCCAGCTCCGACAGGGTCTGGGTCCAGCGGTAATTG GGCAGGTCCGCCCCATTGCCAAGGTTGGGCTTCAGCTTCCCTTTGTCCTTCTCGTCCTCC TCTTCCTCTTCCTCCTCGGCCTCCTGCTTCCCTGATGAGCCAAGACTGCCATTCTTGAGC TGGGCCTCATGATTCTCTGCATCCTTTTTCTGGTCAATTTCCAACTGCAGCCTCTCTGCC TCCTCATCAGTCAGTTCCTTGATCTGGGGCCCAGAGGTCTCGGACTTGGCCTCCTTGGCC AGCCTGGCTGCCCGCTCTGCCTTCTCCCGCCGTTCAGTCTCCTGCCGAGCCCTCTTCTCT CGCCGGGCCTTCTGTGCCAGCTGGTTGTGGTGGTTGAAGGTCTGTGTGATAAGCTTCTCT GCCATCCCCTCTTCTCCTCCAACAAAAAAGTCTGTTTTGCGACGAAGGAAGCTGAAGAAA GTGTTCACAAGCTCCTGCACGCCTCCCTCGTGCTGCTGCGCCATCGCCAACAACATGCCG TCGAAACGATCCTCCTCCTGGTCTCCACCCATCTTGCCAGCTGCTAGCCACGCTCCGAAA TCTGAGCTCTGCTCTCGCGTCCCGCGCTCTCGGCGCCTTCGGGTCGCGTCCGGTGCAACG GTTTCAGTCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTGGGTAAATAATAGTTTTAATGTGTAACAGCAGGCCAACTGGGGAAGA CCTCGCCCCCCAAGGCCCCAGCCCTTTTCCCATGACGCCCTGGGACCTGTGTGTGGGCCA GCCCTGTGCCTGCCCAGCACCAAGGCCCACAAGCCCCAGGGAAGGGTGAGAAAAGAAGAC GGGCGCAGCTGAGAGGACTCAGACCCAAGAGTTCTGGGAGGCGAATGCAGGGGCTAGTTG AATTTGGCCTTGGAAAAATCCATCTCTGGATGCTGATCCATGAACTTCTTCAGAATCTCC TGTTTCTTCTGCTCATCCGAAGTGGGCAGCCCCATGGACTTCTGTCTCTGGTCGTACATC ATCTTCTCCACCATGCTGCGGGTCTCACTGTCCAGGTCTGACAGCTTGGAGTTCTCAGGG TTGATCTTCTTGGTATTGATCTCAGGGTCACTGGACACCAAGCGGCTCCACCACTCCATC TTGTTGATCTTCTCCAGGTGCACTGTGACCACCTTGCCATCCTCAATGAGCCACGAGCTC TCCTCCACCTTCACCTCGTTGTAGAGCTCGCCTTCGATGACCGCCGGCTGGCCCTTGAGC CCCACCCGGATGTGCCTCCGCTGGATGTCCACCACCACGTCCTTCCCCTTAAGCCGGAAG TTCACACGGAAGGGCACTGCCAGATCCAGCTCCGACAGGGTCTGGGTCCAGCGGTAATTG GGCAGGTCCGCCCCATTGCCAAGGTTGGGCTTCAGCTTCCCTTTGTCCTTCTCGTCCTCC TCTTCCTCTTCCTCCTCGGCCTCCTGCTTCCCTGATGAGCCAAGACTGCCATTCTTGAGC TGGGCCTCATGATTCTCTGCATCCTTTTTCTGGTCAATTTCCAACTGCAGCCTCTCTGCC TCCTCATCAGTCAGTTCCTTGATCTGGGGCCCAGAGGTCTCGGACTTGGCCTCCTTGGCC AGCCTGGCTGCCCGCTCTGCCTTCTCCCGCCGTTCAGTCTCCTGCCGAGCCCTCTTCTCT CGCCGGGCCTTCTGTGCCAGCTGGTTGTGGTGGTTGAAGGTCTGTGTGATAAGCTTCTCT GCCATCCCCTCTTCTCCTCCAACAAAAAAGTCTGTTTTGCGACGAAGGAAGCTGAAGAAA GTGTTCACAAGCTCCTGCACGCCTCCCTCGTGCTGCTGCGCCATCGCCAACAACATGCCG TCGAAACGATCCTCCTCCTGGTCTCCACCCATCTTGCCAGCTGCTAGCCACGCTCCGAAA TCTGAGCTCTGCTCTCGCGTCCCGCGCTCTCGGCGCCTTCGGGTCGCGTCCGGTGCAACG GTTTCAGTCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 22-177, + strand, RNAz p=0.996882 | |
| 870-988, - strand, RNAz p=0.986441 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 22-177, + strand, RNAz p=0.996882 | |
| 870-988, - strand, RNAz p=0.986441 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 22-234, gnl|bosTau2|chr21 (12087276-12087066) | |
| 22-234, gnl|Hg17|chr2 (179145868-179145662) | |
| 284-409, gnl|bosTau2|chr2 (79394839-79394964) | |
| 284-409, gnl|canFam2|chr2 (76100473-76100353) | |
| 284-409, gnl|danRer3|chrUn (134451735-134451615) | |
| 284-409, gnl|dasNov1|scaffold_160275 (587-467) | |
| 284-409, gnl|echTel1|scaffold_194414 (2344-2224) | |
| 284-409, gnl|fr1|chrUn (250153698-250153578) | |
| 284-409, gnl|galGal2|chr23 (1745145-1745261) | |
| 284-409, gnl|Hg17|chr1 (26956321-26956196) | |
| 284-409, gnl|hg17|chr2 (153072486-153072606) | |
| 284-409, gnl|mm7|chr4 (132911749-132911629) | |
| 284-409, gnl|Mm7|chr4 (132911626-132911751) | |
| 284-409, gnl|monDom2|scaffold_91 (4674115-4674235) | |
| 284-409, gnl|panTro1|chr13 (42137656-42137776) | |
| 284-409, gnl|rheMac2|chr12 (16041569-16041692) | |
| 284-409, gnl|rn3|chr4 (169782490-169782370) | |
| 284-409, gnl|tetNig1|chr21 (5760034-5760154) | |
| 284-409, gnl|xenTro1|scaffold_98 (702443-702323) | |
| 489-688, gnl|bosTau2|chr2 (79396386-79396585) | |
| 489-688, gnl|canFam2|chr2 (76101686-76101494) | |
| 489-688, gnl|danRer3|chrUn (134452240-134451962) | |
| 489-688, gnl|dasNov1|scaffold_160275 (1834-1642) | |
| 489-688, gnl|echTel1|scaffold_194414 (2621-2425) | |
| 489-688, gnl|fr1|chrUn (250154129-250153867) | |
| 489-688, gnl|galGal2|chr23 (1743761-1743957) | |
| 489-688, gnl|Hg17|chr1 (26953698-26953499) | |
| 489-688, gnl|hg17|chr2 (153072209-153072405) | |
| 489-688, gnl|mm7|chr4 (132912856-132912662) | |
| 489-688, gnl|Mm7|chr4 (132912661-132912855) | |
| 489-688, gnl|monDom2|scaffold_91 (4673568-4673760) | |
| 489-688, gnl|oryCun1|scaffold_108047 (1300-1496) | |
| 489-688, gnl|panTro1|chr13 (42137379-42137575) | |
| 489-688, gnl|rheMac2|chr12 (16041293-16041488) | |
| 489-688, gnl|rn3|chr4 (169782767-169782571) | |
| 489-688, gnl|tetNig1|chr21 (5759616-5759881) | |
| 489-688, gnl|xenTro1|scaffold_98 (704558-704362) | |
| 870-1075, gnl|bosTau2|chr2 (79397656-79397861) | |
| 870-1075, gnl|canFam2|chr2 (76103306-76103008) | |
| 870-1075, gnl|dasNov1|scaffold_160275 (3508-3304) | |
| 870-1075, gnl|fr1|chrUn (250155034-250154743) | |
| 870-1075, gnl|galGal2|chr23 (1742266-1742488) | |
| 870-1075, gnl|Hg17|chr1 (26952293-26952088) | |
| 870-1075, gnl|hg17|chr2 (153071857-153072038) | |
| 870-1075, gnl|mm7|chr4 (132914307-132914006) | |
| 870-1075, gnl|Mm7|chr4 (132914101-132914306) | |
| 870-1075, gnl|monDom2|scaffold_91 (4672277-4672488) | |
| 870-1075, gnl|oryCun1|scaffold_108047 (352-643) | |
| 870-1075, gnl|panTro1|chr13 (42137027-42137208) | |
| 870-1075, gnl|rheMac2|chr12 (16040901-16041110) | |
| 870-1075, gnl|rn3|chr4 (169783150-169782941) | |
| 870-1075, gnl|tetNig1|chr21 (5758382-5758671) | |
| 870-1075, gnl|xenTro1|scaffold_98 (709014-708811) | |
| 1152-1332, gnl|bosTau2|chr2 (79407400-79407579) | |
| 1152-1332, gnl|canFam2|chr2 (76114023-76113658) | |
| 1152-1332, gnl|dasNov1|scaffold_79669 (4935-4575) | |
| 1152-1332, gnl|echTel1|scaffold_313170 (3659-3296) | |
| 1152-1332, gnl|galGal2|chr23 (1739045-1739307) | |
| 1152-1332, gnl|hg17|chr1 (26932135-26932495) | |
| 1152-1332, gnl|Hg17|chr1 (26932562-26932386) | |
| 1152-1332, gnl|loxAfr1|scaffold_5985 (52501-52862) | |
| 1152-1332, gnl|mm7|chr4 (132924658-132924307) | |
| 1152-1332, gnl|Mm7|chr4 (132924238-132924402) | |
| 1152-1332, gnl|monDom2|scaffold_91 (4660779-4661152) | |
| 1152-1332, gnl|oryCun1|scaffold_176528 (10711-10371) | |
| 1152-1332, gnl|panTro1|chr1 (27616990-27617348) | |
| 1152-1332, gnl|rheMac2|chr1 (29566969-29567329) | |
| 1152-1332, gnl|rn3|chr5 (151545683-151546030) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-234, gnl|bosTau2|chr21 (12087276-12087066) | |
| 22-234, gnl|Hg17|chr2 (179145868-179145662) | |
| 284-409, gnl|bosTau2|chr2 (79394839-79394964) | |
| 284-409, gnl|canFam2|chr2 (76100473-76100353) | |
| 284-409, gnl|danRer3|chrUn (134451735-134451615) | |
| 284-409, gnl|dasNov1|scaffold_160275 (587-467) | |
| 284-409, gnl|echTel1|scaffold_194414 (2344-2224) | |
| 284-409, gnl|fr1|chrUn (250153698-250153578) | |
| 284-409, gnl|galGal2|chr23 (1745145-1745261) | |
| 284-409, gnl|Hg17|chr1 (26956321-26956196) | |
| 284-409, gnl|hg17|chr2 (153072486-153072606) | |
| 284-409, gnl|mm7|chr4 (132911749-132911629) | |
| 284-409, gnl|Mm7|chr4 (132911626-132911751) | |
| 284-409, gnl|monDom2|scaffold_91 (4674115-4674235) | |
| 284-409, gnl|panTro1|chr13 (42137656-42137776) | |
| 284-409, gnl|rheMac2|chr12 (16041569-16041692) | |
| 284-409, gnl|rn3|chr4 (169782490-169782370) | |
| 284-409, gnl|tetNig1|chr21 (5760034-5760154) | |
| 284-409, gnl|xenTro1|scaffold_98 (702443-702323) | |
| 489-688, gnl|bosTau2|chr2 (79396386-79396585) | |
| 489-688, gnl|canFam2|chr2 (76101686-76101494) | |
| 489-688, gnl|danRer3|chrUn (134452240-134451962) | |
| 489-688, gnl|dasNov1|scaffold_160275 (1834-1642) | |
| 489-688, gnl|echTel1|scaffold_194414 (2621-2425) | |
| 489-688, gnl|fr1|chrUn (250154129-250153867) | |
| 489-688, gnl|galGal2|chr23 (1743761-1743957) | |
| 489-688, gnl|Hg17|chr1 (26953698-26953499) | |
| 489-688, gnl|hg17|chr2 (153072209-153072405) | |
| 489-688, gnl|mm7|chr4 (132912856-132912662) | |
| 489-688, gnl|Mm7|chr4 (132912661-132912855) | |
| 489-688, gnl|monDom2|scaffold_91 (4673568-4673760) | |
| 489-688, gnl|oryCun1|scaffold_108047 (1300-1496) | |
| 489-688, gnl|panTro1|chr13 (42137379-42137575) | |
| 489-688, gnl|rheMac2|chr12 (16041293-16041488) | |
| 489-688, gnl|rn3|chr4 (169782767-169782571) | |
| 489-688, gnl|tetNig1|chr21 (5759616-5759881) | |
| 489-688, gnl|xenTro1|scaffold_98 (704558-704362) | |
| 870-1075, gnl|bosTau2|chr2 (79397656-79397861) | |
| 870-1075, gnl|canFam2|chr2 (76103306-76103008) | |
| 870-1075, gnl|dasNov1|scaffold_160275 (3508-3304) | |
| 870-1075, gnl|fr1|chrUn (250155034-250154743) | |
| 870-1075, gnl|galGal2|chr23 (1742266-1742488) | |
| 870-1075, gnl|Hg17|chr1 (26952293-26952088) | |
| 870-1075, gnl|hg17|chr2 (153071857-153072038) | |
| 870-1075, gnl|mm7|chr4 (132914307-132914006) | |
| 870-1075, gnl|Mm7|chr4 (132914101-132914306) | |
| 870-1075, gnl|monDom2|scaffold_91 (4672277-4672488) | |
| 870-1075, gnl|oryCun1|scaffold_108047 (352-643) | |
| 870-1075, gnl|panTro1|chr13 (42137027-42137208) | |
| 870-1075, gnl|rheMac2|chr12 (16040901-16041110) | |
| 870-1075, gnl|rn3|chr4 (169783150-169782941) | |
| 870-1075, gnl|tetNig1|chr21 (5758382-5758671) | |
| 870-1075, gnl|xenTro1|scaffold_98 (709014-708811) | |
| 1152-1332, gnl|bosTau2|chr2 (79407400-79407579) | |
| 1152-1332, gnl|canFam2|chr2 (76114023-76113658) | |
| 1152-1332, gnl|dasNov1|scaffold_79669 (4935-4575) | |
| 1152-1332, gnl|echTel1|scaffold_313170 (3659-3296) | |
| 1152-1332, gnl|galGal2|chr23 (1739045-1739307) | |
| 1152-1332, gnl|hg17|chr1 (26932135-26932495) | |
| 1152-1332, gnl|Hg17|chr1 (26932562-26932386) | |
| 1152-1332, gnl|loxAfr1|scaffold_5985 (52501-52862) | |
| 1152-1332, gnl|mm7|chr4 (132924658-132924307) | |
| 1152-1332, gnl|Mm7|chr4 (132924238-132924402) | |
| 1152-1332, gnl|monDom2|scaffold_91 (4660779-4661152) | |
| 1152-1332, gnl|oryCun1|scaffold_176528 (10711-10371) | |
| 1152-1332, gnl|panTro1|chr1 (27616990-27617348) | |
| 1152-1332, gnl|rheMac2|chr1 (29566969-29567329) | |
| 1152-1332, gnl|rn3|chr5 (151545683-151546030) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ece (0.45861) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| ecc (0.23007) | |
| eje (0.197668) | |
| col (0.195008) | |
| eye (0.170503) | |
| cki (0.165235) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| ill (0.351185) | |
| fhi (0.339155) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| ecc (0.23007) | |
| eje (0.197668) | |
| col (0.195008) | |
| eye (0.170503) | |
| cki (0.165235) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cty (0.10408) | |
| jej (0.0989218) |