Non-Coding RNA Search

Ss1.1-Pig4-TMW8068L12.3

Sequence:


               
               TAATGAATTATCTCCCCTAATTTGCAAGGAGGGTGTAAGGAAAACCCAATCTAGCTGTGC
CTGGGAGAATTGTGCCTATGTTTGACCTCTTAGAAAGAATTTCAGCTTATAATTTACTAG
TGCGAAAGATTTACTGACATCACTTAAACATTGGCAGTGAGACCAAATGATGATCTATTG
CTTTTCCTACTCTAGCGCTCCCCACAGCTTGCTGTTACCCCTAGTTGTGGAGGATGAGTG
TTTTCCCCTCACCTTACCTAGCAGAGAGGCAACTTAAGAAGCATCTGCAGATTAGAGGAC
TGACACATTCAGGGAGATAACCTGATTCTTCTCTACTGTGACTGGAATAAAGATGCCAAG
GATTATATTTAATTTGGAACCCTTTTAAAGTTGGTTCCATAAGTGAAGAGGGGGCTACTG
CGTGACCTCTGGACCCCTGAGAGTCTACGAGATGGAAAAGTAGGGGGAAGAAGGCACTTA
GGTTGTTCTCAAATGGGAAGTAAACCTCCACACCTGTTTTGTATGTGAAGCACCATCATT
AATTTTAATGGCAAAATGAAACTGCTATTTAGTTTAAATGTAATGTTTAAAATGGTATTA
AATTTCCTATAGCCTGATTAGACATAATATCTATAATTGTAACATTATGTTTCTGAGAGC
TTTAACTACTTCTCTTTTTTATGCCATCATCTTAATGATTATGGTTACATTTAATTTAGG
TTTGCTGATAACTGAATCTTAAATTCAAGAGGAGACAGCAGCATTAATTCCAAAGGAGTA
TTTCTATATATGGAGGTAGAGGTAGGTGAGGGTGGTTGAGTGCAATGCACCTGTCGCCAG
AAAGTTTCTTTGTTGCGTGCCATGTTGAATAGCAACATCTTTCAGAGTTTGTCAACTGGA
GGGGAAAAGAGTGTTCAAATCTATTTTTCTCAAGTACATTTGGTGATATCATAATCATCT
ATGGTTGGTAAGAGGGTTTTTTTGTTTGTTGAGAATTTGAGCTCTCTTAAGAGTTTATTT
TATTTTAAAGGAACATATACTTTGAATAACAATTTTCTGGGCATGTTTAACTAACCTAGG
TGAGAAAACCATGGTGCTGTTTAATTGTAAATAGATTGTTATAAGATTGGACCAATACTT
GATGTGTACAATTTTAGTATGTAGGGTTTTTGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATGAATTATCTCCCCTAATTTGCAAGGAGGGTGTAAGGAAAACCCAATCTAGCTGTGC
CTGGGAGAATTGTGCCTATGTTTGACCTCTTAGAAAGAATTTCAGCTTATAATTTACTAG
TGCGAAAGATTTACTGACATCACTTAAACATTGGCAGTGAGACCAAATGATGATCTATTG
CTTTTCCTACTCTAGCGCTCCCCACAGCTTGCTGTTACCCCTAGTTGTGGAGGATGAGTG
TTTTCCCCTCACCTTACCTAGCAGAGAGGCAACTTAAGAAGCATCTGCAGATTAGAGGAC
TGACACATTCAGGGAGATAACCTGATTCTTCTCTACTGTGACTGGAATAAAGATGCCAAG
GATTATATTTAATTTGGAACCCTTTTAAAGTTGGTTCCATAAGTGAAGAGGGGGCTACTG
CGTGACCTCTGGACCCCTGAGAGTCTACGAGATGGAAAAGTAGGGGGAAGAAGGCACTTA
GGTTGTTCTCAAATGGGAAGTAAACCTCCACACCTGTTTTGTATGTGAAGCACCATCATT
AATTTTAATGGCAAAATGAAACTGCTATTTAGTTTAAATGTAATGTTTAAAATGGTATTA
AATTTCCTATAGCCTGATTAGACATAATATCTATAATTGTAACATTATGTTTCTGAGAGC
TTTAACTACTTCTCTTTTTTATGCCATCATCTTAATGATTATGGTTACATTTAATTTAGG
TTTGCTGATAACTGAATCTTAAATTCAAGAGGAGACAGCAGCATTAATTCCAAAGGAGTA
TTTCTATATATGGAGGTAGAGGTAGGTGAGGGTGGTTGAGTGCAATGCACCTGTCGCCAG
AAAGTTTCTTTGTTGCGTGCCATGTTGAATAGCAACATCTTTCAGAGTTTGTCAACTGGA
GGGGAAAAGAGTGTTCAAATCTATTTTTCTCAAGTACATTTGGTGATATCATAATCATCT
ATGGTTGGTAAGAGGGTTTTTTTGTTTGTTGAGAATTTGAGCTCTCTTAAGAGTTTATTT
TATTTTAAAGGAACATATACTTTGAATAACAATTTTCTGGGCATGTTTAACTAACCTAGG
TGAGAAAACCATGGTGCTGTTTAATTGTAAATAGATTGTTATAAGATTGGACCAATACTT
GATGTGTACAATTTTAGTATGTAGGGTTTTTGTGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-1176, gnl|bosTau2|chr20 (1467582-1468768)
               

               
               8-1176, gnl|Hg17|chr5 (171570459-171569286)
               

               
               8-1176, gnl|Mm7|chr11 (32469364-32470692)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1176, gnl|bosTau2|chr20 (1467582-1468768)
               

               
               8-1176, gnl|Hg17|chr5 (171570459-171569286)
               

               
               8-1176, gnl|Mm7|chr11 (32469364-32470692)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fty (0.17584)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	8-1176, gnl\|bosTau2\|chr20 (1467582-1468768)
	8-1176, gnl\|Hg17\|chr5 (171570459-171569286)
	8-1176, gnl\|Mm7\|chr11 (32469364-32470692)

	fty (0.17584)
	fco (0.157208)
	spl (0.143184)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	eru (0.120048)