Non-Coding RNA Search

Ss1.1-Pig4-TMW8068L17.3.5

Sequence:


               
               TTGAGGGAGGCTCAGGGCATAAGGCCGAAGGACCCAAGTTGGGAGAAGTGACCAAAGTGT
GGCCAGTTTCCTGACTTCCCCTGGGGTGGATGGGCAAGGGAGTGGGGGGACAGGGGCCCT
GGGCCCACCCCGCCATCTCCTTCCTGTCCCGTCCCGTCTGCGACCCCGGCTGTTCCGGGC
CGCTGTGGGGAGGGGGTGCATTGTGCCCTTGCCATGGCTCTCCCTTCCCAGGTTGCCTTT
CTTGGGGTTGGAGCAGTCGCTCCCCACAGGGTGGGTCAGTCTCCCAAGCCATGTTCGGGT
GGGTGTCCAGGTGTTCTAAGGGCTGGAGGCCAGCCCGGGGTGGGGTTGCCAAGGGAGAAA
CAGTGGCTCTTCTGCTGGGGACCCTCCCAGTTCCTTCTCACGGCTGCCCCTGGGCCTGTG
GGCACCTGTGTCCAGTGCCTCGTCCTTGCTTTTCTGCTCTTGGGCCCTTGGCTCAGGGGT
AGCCTCTGGAAGCTGCCCTTTGGGTGGGCTCCAGGCTTCTGGAAGGGCCCCGGCGGGCTT
GCCCACCAGTGCATTGCGTGAGGCCTGCTTTTTCGGAGCTCTCCCCTGCTGGGAGAGGGG
GTGGCAGGAACTCTGGAAGGGTGGGTGCGGGGGACCCGGAGAACCTGGGCCCCTCTCGGC
CCTCTTGTCTGCTGCTCCTGCTCCGCACTGCTGCTGCTTCCCCAGGCCCTGGCCCCATTT
CCCTGCCCCTCGGCTGGGTGGTGGCTGCATGGGCAGCAGGAGGGCTCTGAAAACAGCAGT
CTGCTCCCTTGTCCTGCTACCTCCCCAAACTCGCCTGCTGGCGTTCCAGGAGGGGGCCGT
GGTGGCCCCTCGAGCCTAGGCTTGGGCTCCGAGGATGGGCAGGGGCTGGGCCGGGCAGGC
TCACCTGGGGCTGAGGGGCTGCTCCCAGGCCTGGCTCCTATTGTAGACTCCCCTCTGCCC
GTCCCCCATCTCCGCTGTCCCTCCTGGCAGCTGGATGCACACACCTTGGGGAAGGAGGAG
CACCCGAGGAGCACAGTTCAGGGGCTTGGCCTCTGGTCTGGGCCGATGGCCTGGGCAGAG
GCTGGGGCAGGAGCCGCAGGGTCACAGAAAGAGTTTTCCTAGGAGAGGCTCAGTCCTGCC
TCCCCGCCAGGGTCCAGACCACCGCCTCGCTGGCTCCTCCTCCCCTCTTTCCCCTTGGGT
CCCCCTCAGCCCCTGGCGTCTTCTTTGCTGTTCAGATTAAAGCCTCTGTTTTGCACCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGGGAGGCTCAGGGCATAAGGCCGAAGGACCCAAGTTGGGAGAAGTGACCAAAGTGT
GGCCAGTTTCCTGACTTCCCCTGGGGTGGATGGGCAAGGGAGTGGGGGGACAGGGGCCCT
GGGCCCACCCCGCCATCTCCTTCCTGTCCCGTCCCGTCTGCGACCCCGGCTGTTCCGGGC
CGCTGTGGGGAGGGGGTGCATTGTGCCCTTGCCATGGCTCTCCCTTCCCAGGTTGCCTTT
CTTGGGGTTGGAGCAGTCGCTCCCCACAGGGTGGGTCAGTCTCCCAAGCCATGTTCGGGT
GGGTGTCCAGGTGTTCTAAGGGCTGGAGGCCAGCCCGGGGTGGGGTTGCCAAGGGAGAAA
CAGTGGCTCTTCTGCTGGGGACCCTCCCAGTTCCTTCTCACGGCTGCCCCTGGGCCTGTG
GGCACCTGTGTCCAGTGCCTCGTCCTTGCTTTTCTGCTCTTGGGCCCTTGGCTCAGGGGT
AGCCTCTGGAAGCTGCCCTTTGGGTGGGCTCCAGGCTTCTGGAAGGGCCCCGGCGGGCTT
GCCCACCAGTGCATTGCGTGAGGCCTGCTTTTTCGGAGCTCTCCCCTGCTGGGAGAGGGG
GTGGCAGGAACTCTGGAAGGGTGGGTGCGGGGGACCCGGAGAACCTGGGCCCCTCTCGGC
CCTCTTGTCTGCTGCTCCTGCTCCGCACTGCTGCTGCTTCCCCAGGCCCTGGCCCCATTT
CCCTGCCCCTCGGCTGGGTGGTGGCTGCATGGGCAGCAGGAGGGCTCTGAAAACAGCAGT
CTGCTCCCTTGTCCTGCTACCTCCCCAAACTCGCCTGCTGGCGTTCCAGGAGGGGGCCGT
GGTGGCCCCTCGAGCCTAGGCTTGGGCTCCGAGGATGGGCAGGGGCTGGGCCGGGCAGGC
TCACCTGGGGCTGAGGGGCTGCTCCCAGGCCTGGCTCCTATTGTAGACTCCCCTCTGCCC
GTCCCCCATCTCCGCTGTCCCTCCTGGCAGCTGGATGCACACACCTTGGGGAAGGAGGAG
CACCCGAGGAGCACAGTTCAGGGGCTTGGCCTCTGGTCTGGGCCGATGGCCTGGGCAGAG
GCTGGGGCAGGAGCCGCAGGGTCACAGAAAGAGTTTTCCTAGGAGAGGCTCAGTCCTGCC
TCCCCGCCAGGGTCCAGACCACCGCCTCGCTGGCTCCTCCTCCCCTCTTTCCCCTTGGGT
CCCCCTCAGCCCCTGGCGTCTTCTTTGCTGTTCAGATTAAAGCCTCTGTTTTGCACCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               934-1040, - strand, RNAz p=0.992906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               934-1040, - strand, RNAz p=0.992906

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               1036-1169, - strand, RNAmicro p=0.999673
               

               
               1035-1152, + strand, RNAmicro p=0.917315

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1036-1169, - strand, RNAmicro p=0.999673
               

               
               1035-1152, + strand, RNAmicro p=0.917315

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-465, gnl|bosTau2|chr11 (78924145-78924635)
               

               
               2-465, gnl|Hg17|chr9 (128989441-128989959)
               

               
               2-465, gnl|Mm7|chr2 (30453891-30454342)
               


               
               866-1259, gnl|bosTau2|chr11 (78924889-78925286)
               

               
               866-1259, gnl|canFam2|chr9 (57880706-57880197)
               

               
               866-1259, gnl|dasNov1|scaffold_20471 (1294-752)
               

               
               866-1259, gnl|hg17|chr9 (128990373-128990848)
               

               
               866-1259, gnl|Hg17|chr9 (128990353-128990776)
               

               
               866-1259, gnl|mm7|chr2 (30454724-30455172)
               

               
               866-1259, gnl|Mm7|chr2 (30454658-30455115)
               

               
               866-1259, gnl|monDom2|scaffold_51 (3818069-3818804)
               

               
               866-1259, gnl|panTro1|chr11 (113834290-113834765)
               

               
               866-1259, gnl|rheMac2|chr15 (9697700-9697227)
               

               
               866-1259, gnl|rn3|chr3 (9492130-9492567)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-465, gnl|bosTau2|chr11 (78924145-78924635)
               

               
               2-465, gnl|Hg17|chr9 (128989441-128989959)
               

               
               2-465, gnl|Mm7|chr2 (30453891-30454342)
               


               
               866-1259, gnl|bosTau2|chr11 (78924889-78925286)
               

               
               866-1259, gnl|canFam2|chr9 (57880706-57880197)
               

               
               866-1259, gnl|dasNov1|scaffold_20471 (1294-752)
               

               
               866-1259, gnl|hg17|chr9 (128990373-128990848)
               

               
               866-1259, gnl|Hg17|chr9 (128990353-128990776)
               

               
               866-1259, gnl|mm7|chr2 (30454724-30455172)
               

               
               866-1259, gnl|Mm7|chr2 (30454658-30455115)
               

               
               866-1259, gnl|monDom2|scaffold_51 (3818069-3818804)
               

               
               866-1259, gnl|panTro1|chr11 (113834290-113834765)
               

               
               866-1259, gnl|rheMac2|chr15 (9697700-9697227)
               

               
               866-1259, gnl|rn3|chr3 (9492130-9492567)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1036-1169, - strand, RNAmicro p=0.999673
	1035-1152, + strand, RNAmicro p=0.917315

	2-465, gnl\|bosTau2\|chr11 (78924145-78924635)
	2-465, gnl\|Hg17\|chr9 (128989441-128989959)
	2-465, gnl\|Mm7\|chr2 (30453891-30454342)

	866-1259, gnl\|bosTau2\|chr11 (78924889-78925286)
	866-1259, gnl\|canFam2\|chr9 (57880706-57880197)
	866-1259, gnl\|dasNov1\|scaffold_20471 (1294-752)
	866-1259, gnl\|hg17\|chr9 (128990373-128990848)
	866-1259, gnl\|Hg17\|chr9 (128990353-128990776)
	866-1259, gnl\|mm7\|chr2 (30454724-30455172)
	866-1259, gnl\|Mm7\|chr2 (30454658-30455115)
	866-1259, gnl\|monDom2\|scaffold_51 (3818069-3818804)
	866-1259, gnl\|panTro1\|chr11 (113834290-113834765)
	866-1259, gnl\|rheMac2\|chr15 (9697700-9697227)
	866-1259, gnl\|rn3\|chr3 (9492130-9492567)

	mcp (0.341297)
	cag (0.302389)
	cga (0.279096)
	nms (0.213858)
	mas (0.210305)
	fty (0.17584)
	ton (0.1755)
	fbs (0.175346)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	nca (0.136874)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)
	eje (0.0988338)