Non-Coding RNA Search

Ss1.1-Pig4-TMW8068M05.3

Sequence:


               
               CTCCCTCTGCAGCCTCAACACCCTGCTGGCAGGAGCCTCGTGCCTGCCGCACGCCTCCAG
CACAGGCAGCCTCGGCCTCCTCTGCAGAAGTGGGGGTCTCAGAGCCGGCCCCGCGGCCCC
CGCCTGGGCTGTCCCCCCACCGCCCTTGGAAAGGAGTCTCGTCAGACTGGGTTTTGGCTA
AGGGCTGGCCTGCACCCTGGCCTCACCCCCACTGGCCCCTCCTGAGACTGCCTCCCACGG
ATGACTCCTTGGAAGCAGGGACTTTGTCTTTGGATCCCAGGATCCCCAGCACTGAGCACA
AGGCCCCGTCATGCAGGGCCTGAATTCTCTGCTGTGACAGAGGAAGATTTACCCACAAAG
GGTGGGCTGGAAAGCTGCCTTCTGCAGCTGAAGGGCTGCTTGCCGGGAAGGACTGGACGC
TGCAGAGGCCCTGCCTGCATCAGGTCAGATCCAAAATCCCTGTCACTCTGGAGACGGGCA
GGCCTGTGTGGCTTTGCAAATGCCCTTTCCAACAGTGTTTCTTGAGGGCATCTCGGGCAA
GTCTGCCGCTGGTGTAAGCTCACCCTAGGGGGGGGTTTCCTTCACTTTTCTGGGCCAGAG
TGTGGTGTCAAGGTCAAAGGCATGGGTTTCGGTGTTGGGCAAGCCTGGGTCCAGTTCCTG
ACACTGCCTCTGCTCTCTGCTTGATCTTGGGCAGGACACGCAGCCTTTGCAAGCCTCATG
GGGTTCATAACACTTCCCCACCTAGGGTTGTGAGGAAATTAAATTAAATCCTATTGTAAA
GACTGGTACTTGGCTTGTGTTAATGCTCTATAAATAGTCACGCTTTTCTTAGCCCTAATT
TTCCAGCTGAGAAGCCGATTATTTGATAATGGAGCAGCAGAGGACTGAGAGTCAAGGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTCTGCAGCCTCAACACCCTGCTGGCAGGAGCCTCGTGCCTGCCGCACGCCTCCAG
CACAGGCAGCCTCGGCCTCCTCTGCAGAAGTGGGGGTCTCAGAGCCGGCCCCGCGGCCCC
CGCCTGGGCTGTCCCCCCACCGCCCTTGGAAAGGAGTCTCGTCAGACTGGGTTTTGGCTA
AGGGCTGGCCTGCACCCTGGCCTCACCCCCACTGGCCCCTCCTGAGACTGCCTCCCACGG
ATGACTCCTTGGAAGCAGGGACTTTGTCTTTGGATCCCAGGATCCCCAGCACTGAGCACA
AGGCCCCGTCATGCAGGGCCTGAATTCTCTGCTGTGACAGAGGAAGATTTACCCACAAAG
GGTGGGCTGGAAAGCTGCCTTCTGCAGCTGAAGGGCTGCTTGCCGGGAAGGACTGGACGC
TGCAGAGGCCCTGCCTGCATCAGGTCAGATCCAAAATCCCTGTCACTCTGGAGACGGGCA
GGCCTGTGTGGCTTTGCAAATGCCCTTTCCAACAGTGTTTCTTGAGGGCATCTCGGGCAA
GTCTGCCGCTGGTGTAAGCTCACCCTAGGGGGGGGTTTCCTTCACTTTTCTGGGCCAGAG
TGTGGTGTCAAGGTCAAAGGCATGGGTTTCGGTGTTGGGCAAGCCTGGGTCCAGTTCCTG
ACACTGCCTCTGCTCTCTGCTTGATCTTGGGCAGGACACGCAGCCTTTGCAAGCCTCATG
GGGTTCATAACACTTCCCCACCTAGGGTTGTGAGGAAATTAAATTAAATCCTATTGTAAA
GACTGGTACTTGGCTTGTGTTAATGCTCTATAAATAGTCACGCTTTTCTTAGCCCTAATT
TTCCAGCTGAGAAGCCGATTATTTGATAATGGAGCAGCAGAGGACTGAGAGTCAAGGATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               780-896, + strand, RNAz p=0.752449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               780-896, + strand, RNAz p=0.752449

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               841-932, + strand, RNAmicro p=0.999484

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               841-932, + strand, RNAmicro p=0.999484

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-183, gnl|bosTau2|chr7 (35837742-35837551)
               

               
               1-183, gnl|Hg17|chr5 (141298322-141298510)
               

               
               1-183, gnl|Mm7|chr18 (38637311-38637487)
               


               
               308-896, gnl|bosTau2|chr7 (35832128-35831521)
               

               
               308-896, gnl|Hg17|chr5 (141303954-141304556)
               

               
               308-896, gnl|Mm7|chr18 (38643880-38644435)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr7 (35837742-35837551)
               

               
               1-183, gnl|Hg17|chr5 (141298322-141298510)
               

               
               1-183, gnl|Mm7|chr18 (38637311-38637487)
               


               
               308-896, gnl|bosTau2|chr7 (35832128-35831521)
               

               
               308-896, gnl|Hg17|chr5 (141303954-141304556)
               

               
               308-896, gnl|Mm7|chr18 (38643880-38644435)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	1-183, gnl\|bosTau2\|chr7 (35837742-35837551)
	1-183, gnl\|Hg17\|chr5 (141298322-141298510)
	1-183, gnl\|Mm7\|chr18 (38637311-38637487)

	308-896, gnl\|bosTau2\|chr7 (35832128-35831521)
	308-896, gnl\|Hg17\|chr5 (141303954-141304556)
	308-896, gnl\|Mm7\|chr18 (38643880-38644435)