Non-Coding RNA Search

Ss1.1-Pig4-TMW8068M08.3

Sequence:


               
               CTGACAGATGAGGAGAAACGTCTGCTAGGACAGGAAGGGGTCTCCCTGCCCTCTCACCTG
CCCCTCACCAAGGCAGAAGAGAGGGTCCTCAAGAAAGTCAGGAGGAAAATCCGCAACAAG
CAGTCAGCGCAGGACAGCCGGCGGCGAAAGAAAGAGTACATTGATGGACTAGAGAGCAGG
GTGGCTGCCTGTTCTGCACAGAACCAGGAACTACAGAAGAAAGTTCAGGAGCTGGAGAGG
CACAACCTCTCTCTGGTGACTCAGCTCCGCCAGCTGCAGATGCTTATTGTTCAAACGTCC
AACAAAGCTGCCCAGACGAGCACTTGTGTTCTGATCCTTCTTTTCTCTTTGGCTCTCATC
ATCCTGCCCAGTTTCAGCCCCTTTCAGGACCTGCCCGAAGCTGGGCCTGAGGACTACCAG
CCTCGAGGAGTGATTTCTAGAAATATCCTGACTCACAAGGACACGACAGGAAATCTGGAG
AACCCAGTGGTAGAGTCCAGATTGGAAGGGCCACGGGGGGTCAAGGGTAGAAATGGCTCC
ACAAGGACACTGCTTGAGAAGATGGGGGGAAGGGCAGGCCCCAGCAGGCACATCAGAACT
GTGCTGCACGCTGATGAGATGTGAGCTGTCACACTTCCTGGCCCACTTCCCAATCATAAC
AAGGAATCCAGGGCTCCAATATGCTTCTGCTTCCCCCTAGGATTCCTGCTCAGGGATCTT
TGGCCTCAGGGGACTGAGTCACATCAGGATGTCCTAGATGTCTGTACTCTGTGGCTCAGT
CTGCCTATGGAGGGGGGGCACCTCAAATACTTTTGTTGCGTGTCAGTGATTTTATTTCTT
CTTTGGGGATGGGGTGAAAGAAAATATTTGTTTTGGCTGAGAAATAAACTTTTTTGCTGC
CTAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACAGATGAGGAGAAACGTCTGCTAGGACAGGAAGGGGTCTCCCTGCCCTCTCACCTG
CCCCTCACCAAGGCAGAAGAGAGGGTCCTCAAGAAAGTCAGGAGGAAAATCCGCAACAAG
CAGTCAGCGCAGGACAGCCGGCGGCGAAAGAAAGAGTACATTGATGGACTAGAGAGCAGG
GTGGCTGCCTGTTCTGCACAGAACCAGGAACTACAGAAGAAAGTTCAGGAGCTGGAGAGG
CACAACCTCTCTCTGGTGACTCAGCTCCGCCAGCTGCAGATGCTTATTGTTCAAACGTCC
AACAAAGCTGCCCAGACGAGCACTTGTGTTCTGATCCTTCTTTTCTCTTTGGCTCTCATC
ATCCTGCCCAGTTTCAGCCCCTTTCAGGACCTGCCCGAAGCTGGGCCTGAGGACTACCAG
CCTCGAGGAGTGATTTCTAGAAATATCCTGACTCACAAGGACACGACAGGAAATCTGGAG
AACCCAGTGGTAGAGTCCAGATTGGAAGGGCCACGGGGGGTCAAGGGTAGAAATGGCTCC
ACAAGGACACTGCTTGAGAAGATGGGGGGAAGGGCAGGCCCCAGCAGGCACATCAGAACT
GTGCTGCACGCTGATGAGATGTGAGCTGTCACACTTCCTGGCCCACTTCCCAATCATAAC
AAGGAATCCAGGGCTCCAATATGCTTCTGCTTCCCCCTAGGATTCCTGCTCAGGGATCTT
TGGCCTCAGGGGACTGAGTCACATCAGGATGTCCTAGATGTCTGTACTCTGTGGCTCAGT
CTGCCTATGGAGGGGGGGCACCTCAAATACTTTTGTTGCGTGTCAGTGATTTTATTTCTT
CTTTGGGGATGGGGTGAAAGAAAATATTTGTTTTGGCTGAGAAATAAACTTTTTTGCTGC
CTAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832777|ref|XP_608017.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832777|ref|XP_608017.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               468-587, - strand, RNAz p=0.616836
               

               
               628-744, + strand, RNAz p=0.965679

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               468-587, - strand, RNAz p=0.616836
               

               
               628-744, + strand, RNAz p=0.965679

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_130898, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_130898, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               71-180, gnl|bosTau2|chr3 (8153311-8153420)
               

               
               71-180, gnl|canFam2|chr7 (46137759-46137649)
               

               
               71-180, gnl|danRer3|chrNA (107076991-107077102)
               

               
               71-180, gnl|dasNov1|scaffold_8489 (551-441)
               

               
               71-180, gnl|echTel1|scaffold_307301 (12959-12848)
               

               
               71-180, gnl|fr1|chrUn (267009653-267009542)
               

               
               71-180, gnl|galGal2|chr28 (1479840-1479729)
               

               
               71-180, gnl|hg17|chr1 (150758520-150758631)
               

               
               71-180, gnl|Hg17|chr1 (150758519-150758628)
               

               
               71-180, gnl|loxAfr1|scaffold_37285 (8984-9095)
               

               
               71-180, gnl|mm7|chr3 (90369488-90369378)
               

               
               71-180, gnl|Mm7|chr3 (90369488-90369379)
               

               
               71-180, gnl|monDom2|scaffold_59 (4104366-4104255)
               

               
               71-180, gnl|oryCun1|scaffold_105180 (7550-7440)
               

               
               71-180, gnl|panTro1|chr1 (132738664-132738774)
               

               
               71-180, gnl|rheMac2|chr1 (132488536-132488646)
               

               
               71-180, gnl|rn3|chr2 (182428387-182428277)
               

               
               71-180, gnl|tetNig1|chr12 (8795476-8795585)
               

               
               71-180, gnl|xenTro1|scaffold_1435 (150087-150197)
               


               
               429-895, gnl|bosTau2|chr3 (8154209-8154666)
               

               
               429-895, gnl|Hg17|chr1 (150759419-150759900)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-180, gnl|bosTau2|chr3 (8153311-8153420)
               

               
               71-180, gnl|canFam2|chr7 (46137759-46137649)
               

               
               71-180, gnl|danRer3|chrNA (107076991-107077102)
               

               
               71-180, gnl|dasNov1|scaffold_8489 (551-441)
               

               
               71-180, gnl|echTel1|scaffold_307301 (12959-12848)
               

               
               71-180, gnl|fr1|chrUn (267009653-267009542)
               

               
               71-180, gnl|galGal2|chr28 (1479840-1479729)
               

               
               71-180, gnl|hg17|chr1 (150758520-150758631)
               

               
               71-180, gnl|Hg17|chr1 (150758519-150758628)
               

               
               71-180, gnl|loxAfr1|scaffold_37285 (8984-9095)
               

               
               71-180, gnl|mm7|chr3 (90369488-90369378)
               

               
               71-180, gnl|Mm7|chr3 (90369488-90369379)
               

               
               71-180, gnl|monDom2|scaffold_59 (4104366-4104255)
               

               
               71-180, gnl|oryCun1|scaffold_105180 (7550-7440)
               

               
               71-180, gnl|panTro1|chr1 (132738664-132738774)
               

               
               71-180, gnl|rheMac2|chr1 (132488536-132488646)
               

               
               71-180, gnl|rn3|chr2 (182428387-182428277)
               

               
               71-180, gnl|tetNig1|chr12 (8795476-8795585)
               

               
               71-180, gnl|xenTro1|scaffold_1435 (150087-150197)
               


               
               429-895, gnl|bosTau2|chr3 (8154209-8154666)
               

               
               429-895, gnl|Hg17|chr1 (150759419-150759900)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cst (0.420109)
               

               
               nje (0.16592)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               nje (0.16592)
               

               
               pty (0.142714)

	468-587, - strand, RNAz p=0.616836
	628-744, + strand, RNAz p=0.965679

	71-180, gnl\|bosTau2\|chr3 (8153311-8153420)
	71-180, gnl\|canFam2\|chr7 (46137759-46137649)
	71-180, gnl\|danRer3\|chrNA (107076991-107077102)
	71-180, gnl\|dasNov1\|scaffold_8489 (551-441)
	71-180, gnl\|echTel1\|scaffold_307301 (12959-12848)
	71-180, gnl\|fr1\|chrUn (267009653-267009542)
	71-180, gnl\|galGal2\|chr28 (1479840-1479729)
	71-180, gnl\|hg17\|chr1 (150758520-150758631)
	71-180, gnl\|Hg17\|chr1 (150758519-150758628)
	71-180, gnl\|loxAfr1\|scaffold_37285 (8984-9095)
	71-180, gnl\|mm7\|chr3 (90369488-90369378)
	71-180, gnl\|Mm7\|chr3 (90369488-90369379)
	71-180, gnl\|monDom2\|scaffold_59 (4104366-4104255)
	71-180, gnl\|oryCun1\|scaffold_105180 (7550-7440)
	71-180, gnl\|panTro1\|chr1 (132738664-132738774)
	71-180, gnl\|rheMac2\|chr1 (132488536-132488646)
	71-180, gnl\|rn3\|chr2 (182428387-182428277)
	71-180, gnl\|tetNig1\|chr12 (8795476-8795585)
	71-180, gnl\|xenTro1\|scaffold_1435 (150087-150197)

	429-895, gnl\|bosTau2\|chr3 (8154209-8154666)
	429-895, gnl\|Hg17\|chr1 (150759419-150759900)