Ss1.1-Pig4-TMW8068M17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCCAAGGGCAAGAGCACTCCGAAACCACAGGCCCCCAAGGCCAATGGCACCACTGCA TTGACTGCCCAGAATGGAAAAGCAGATAGGGATAGCAACGAGGAGGAAGAGGACAAGAAA AAGGCAGCAGTGGGAGTTTCTAAGCCAGGTTCAGGAAAGAAGCGGAAGCAAAATGAGGCT GCTAAGGAGACAGAGACACCTCCAGCCAAGAAGATAAAGCCCCAGACTCCCAACACATTT CCTAAAAGGAAGAAAGGAGAGCGCAGGGGATCCTCTCCATTCCGAAGGATAAGGGAGGAG GAGATCGAGGTGGATGCTCGGGTGGCAGATAATTCCTTTGATGCCAAGCGAGGTGCAGCT GGAGACTGGGGGGAGCGAGCCAACCAGGTTCTGAAGTTCACCAAAGGCAAATCCTTCCGG CATGAGAAAACCAAGAAGAAGCGGGGCAGCTACCGGGGAGGCTCCATCTCTGTGCAAGTC AATTCCATTAAGTTCGACAGCGAGTGACCTAGGGCTGTCCCTGGTGCAGCAGAGGTGATG ACCTGAGACCCCACACTTGCCCCAGTGGACCTGGGAACGCTCAGCTCTATCACGGGAGGG GCTTGGTGAGGACAGCAGTTGTTTAGAATAGGTCTGAAGACTTTGCGTGGTGACATCCTC TAAGGTCCTCTCCTGTGTTTGTGATTTTGTACAGATTTGGTTTTGCGCGTTGGGTAGCAA GGACAAGGGAAGGGGAATGTCCTTTTTTAAGAAAAAATTTTAGTTGTTCCCTTCTCCCTG TTCCGTGGAAGTCCTCATACTGAAAAATTTGTATATTTTATATTAAACCATTTTCTGTTG ATTTTTGTTGTGATTTTCAAAGGTGGGTTCCCACAGATAAAATCTTAGCTATCGTCCAAG GCATAGTGAAGGTCATATGTGTGAATTTTAATAATTGGAGAATTCTGCCTATGTGGATGC TCATGTTCACATTTCATCTCTTCTACCCTTCAGAGGGACAATTGAGAATGGTTACTGTAG GAATTCCCTGATGGATCCGCAGGTTAAGGATCCAGCGTTGTCACTGCTTGTGGCGCAGCT GTGGCTGAGTTTGATTCCTGCCCTGGGAACTTCCATATGCCACAGGCATGGCGGAAAAAA GGAAGGAATGGCTAATGTACATATCTGTGAAGCATGAATTATGTACCTCATTCATGGAGT GTAGGACCGAAGTTTTCAGCCAGCATGGACTTAACCTACTTTCGGGGATTTACTCTTTTG TTAAAGGCAAAATTCTGGTGTGGTATGAATGCCATGGATTCAGTCTGAATATTTTGTTTC CTGTAATTTTATTATTATATAATGTTTGCAATACATGTTTTTTAATTTGAAAGCATAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCCAAGGGCAAGAGCACTCCGAAACCACAGGCCCCCAAGGCCAATGGCACCACTGCA TTGACTGCCCAGAATGGAAAAGCAGATAGGGATAGCAACGAGGAGGAAGAGGACAAGAAA AAGGCAGCAGTGGGAGTTTCTAAGCCAGGTTCAGGAAAGAAGCGGAAGCAAAATGAGGCT GCTAAGGAGACAGAGACACCTCCAGCCAAGAAGATAAAGCCCCAGACTCCCAACACATTT CCTAAAAGGAAGAAAGGAGAGCGCAGGGGATCCTCTCCATTCCGAAGGATAAGGGAGGAG GAGATCGAGGTGGATGCTCGGGTGGCAGATAATTCCTTTGATGCCAAGCGAGGTGCAGCT GGAGACTGGGGGGAGCGAGCCAACCAGGTTCTGAAGTTCACCAAAGGCAAATCCTTCCGG CATGAGAAAACCAAGAAGAAGCGGGGCAGCTACCGGGGAGGCTCCATCTCTGTGCAAGTC AATTCCATTAAGTTCGACAGCGAGTGACCTAGGGCTGTCCCTGGTGCAGCAGAGGTGATG ACCTGAGACCCCACACTTGCCCCAGTGGACCTGGGAACGCTCAGCTCTATCACGGGAGGG GCTTGGTGAGGACAGCAGTTGTTTAGAATAGGTCTGAAGACTTTGCGTGGTGACATCCTC TAAGGTCCTCTCCTGTGTTTGTGATTTTGTACAGATTTGGTTTTGCGCGTTGGGTAGCAA GGACAAGGGAAGGGGAATGTCCTTTTTTAAGAAAAAATTTTAGTTGTTCCCTTCTCCCTG TTCCGTGGAAGTCCTCATACTGAAAAATTTGTATATTTTATATTAAACCATTTTCTGTTG ATTTTTGTTGTGATTTTCAAAGGTGGGTTCCCACAGATAAAATCTTAGCTATCGTCCAAG GCATAGTGAAGGTCATATGTGTGAATTTTAATAATTGGAGAATTCTGCCTATGTGGATGC TCATGTTCACATTTCATCTCTTCTACCCTTCAGAGGGACAATTGAGAATGGTTACTGTAG GAATTCCCTGATGGATCCGCAGGTTAAGGATCCAGCGTTGTCACTGCTTGTGGCGCAGCT GTGGCTGAGTTTGATTCCTGCCCTGGGAACTTCCATATGCCACAGGCATGGCGGAAAAAA GGAAGGAATGGCTAATGTACATATCTGTGAAGCATGAATTATGTACCTCATTCATGGAGT GTAGGACCGAAGTTTTCAGCCAGCATGGACTTAACCTACTTTCGGGGATTTACTCTTTTG TTAAAGGCAAAATTCTGGTGTGGTATGAATGCCATGGATTCAGTCTGAATATTTTGTTTC CTGTAATTTTATTATTATATAATGTTTGCAATACATGTTTTTTAATTTGAAAGCATAAAC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 781-899, + strand, RNAz p=0.618617 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 781-899, + strand, RNAz p=0.618617 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC006769, + |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 2-150, gnl|bosTau2|chr26 (15319861-15320009) | |
| 2-150, gnl|canFam2|chr28 (17696156-17696299) | |
| 2-150, gnl|canFam2|chr28 (17696159-17696316) | |
| 2-150, gnl|danRer3|chr13 (21727417-21727246) | |
| 2-150, gnl|dasNov1|scaffold_30464 (36985-36851) | |
| 2-150, gnl|dasNov1|scaffold_30464 (36985-36825) | |
| 2-150, gnl|echTel1|scaffold_294327 (38763-38903) | |
| 2-150, gnl|echTel1|scaffold_294327 (38766-38906) | |
| 2-150, gnl|fr1|chrUn (213497081-213496949) | |
| 2-150, gnl|galGal2|chr6 (16004085-16004282) | |
| 2-150, gnl|hg17|chr10 (103910663-103910817) | |
| 2-150, gnl|Hg17|chr10 (103910691-103910842) | |
| 2-150, gnl|hg17|chr8 (138779366-138779502) | |
| 2-150, gnl|loxAfr1|scaffold_12349 (39633-39773) | |
| 2-150, gnl|loxAfr1|scaffold_12349 (39636-39778) | |
| 2-150, gnl|mm7|chr19 (45979817-45979971) | |
| 2-150, gnl|Mm7|chr19 (45979851-45979999) | |
| 2-150, gnl|mm7|chrX (19795614-19795748) | |
| 2-150, gnl|monDom2|scaffold_14 (61255213-61255080) | |
| 2-150, gnl|monDom2|scaffold_26 (41018946-41018788) | |
| 2-150, gnl|oryCun1|scaffold_204270 (4236-4092) | |
| 2-150, gnl|oryCun1|scaffold_204270 (4233-4075) | |
| 2-150, gnl|panTro1|chr7 (141761359-141761495) | |
| 2-150, gnl|panTro1|chr8 (105671004-105671158) | |
| 2-150, gnl|rheMac2|chr8 (140207868-140208004) | |
| 2-150, gnl|rheMac2|chr9 (101820719-101820873) | |
| 2-150, gnl|rn3|chr1 (251566296-251566430) | |
| 2-150, gnl|rn3|chr1 (251566299-251566447) | |
| 2-150, gnl|xenTro1|scaffold_507 (631738-631889) | |
| 347-995, gnl|bosTau2|chr26 (15320736-15321365) | |
| 347-995, gnl|canFam2|chr28 (17698744-17698032) | |
| 347-995, gnl|dasNov1|scaffold_45634 (11968-11239) | |
| 347-995, gnl|echTel1|scaffold_294327 (40425-39711) | |
| 347-995, gnl|Hg17|chr10 (103911856-103912502) | |
| 347-995, gnl|hg17|chr4 (106274914-106275647) | |
| 347-995, gnl|loxAfr1|scaffold_12349 (41514-40803) | |
| 347-995, gnl|Mm7|chr19 (45980644-45981216) | |
| 347-995, gnl|mm7|chrX (19796892-19796188) | |
| 347-995, gnl|oryCun1|scaffold_204270 (2476-3177) | |
| 347-995, gnl|panTro1|chr3 (122683475-122684209) | |
| 347-995, gnl|rheMac2|chr5 (98062460-98063194) | |
| 347-995, gnl|rn3|chrX (72025597-72026299) | |
| 1148-1380, gnl|bosTau2|chr26 (15321394-15321621) | |
| 1148-1380, gnl|canFam2|chr28 (17699019-17698546) | |
| 1148-1380, gnl|canFam2|chr28 (17698451-17698693) | |
| 1148-1380, gnl|dasNov1|scaffold_45634 (12380-11764) | |
| 1148-1380, gnl|dasNov1|scaffold_45634 (11659-11913) | |
| 1148-1380, gnl|echTel1|scaffold_294327 (40774-40225) | |
| 1148-1380, gnl|echTel1|scaffold_294327 (40130-40369) | |
| 1148-1380, gnl|hg17|chr1 (85659852-85660345) | |
| 1148-1380, gnl|hg17|chr10 (103912443-103912698) | |
| 1148-1380, gnl|Hg17|chr10 (103912525-103912775) | |
| 1148-1380, gnl|loxAfr1|scaffold_12349 (41887-41309) | |
| 1148-1380, gnl|loxAfr1|scaffold_12349 (41217-41462) | |
| 1148-1380, gnl|mm7|chr19 (45981192-45981421) | |
| 1148-1380, gnl|Mm7|chr19 (45981241-45981490) | |
| 1148-1380, gnl|mm7|chrX (19797097-19796678) | |
| 1148-1380, gnl|oryCun1|scaffold_204270 (2188-2688) | |
| 1148-1380, gnl|oryCun1|scaffold_204270 (2782-2534) | |
| 1148-1380, gnl|panTro1|chr1 (84337831-84338324) | |
| 1148-1380, gnl|panTro1|chr8 (105672784-105673039) | |
| 1148-1380, gnl|rheMac2|chr1 (88265016-88265510) | |
| 1148-1380, gnl|rheMac2|chr9 (101822494-101822748) | |
| 1148-1380, gnl|rn3|chr1 (251567647-251567903) | |
| 1148-1380, gnl|rn3|chrX (72025395-72025812) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-150, gnl|bosTau2|chr26 (15319861-15320009) | |
| 2-150, gnl|canFam2|chr28 (17696156-17696299) | |
| 2-150, gnl|canFam2|chr28 (17696159-17696316) | |
| 2-150, gnl|danRer3|chr13 (21727417-21727246) | |
| 2-150, gnl|dasNov1|scaffold_30464 (36985-36851) | |
| 2-150, gnl|dasNov1|scaffold_30464 (36985-36825) | |
| 2-150, gnl|echTel1|scaffold_294327 (38763-38903) | |
| 2-150, gnl|echTel1|scaffold_294327 (38766-38906) | |
| 2-150, gnl|fr1|chrUn (213497081-213496949) | |
| 2-150, gnl|galGal2|chr6 (16004085-16004282) | |
| 2-150, gnl|hg17|chr10 (103910663-103910817) | |
| 2-150, gnl|Hg17|chr10 (103910691-103910842) | |
| 2-150, gnl|hg17|chr8 (138779366-138779502) | |
| 2-150, gnl|loxAfr1|scaffold_12349 (39633-39773) | |
| 2-150, gnl|loxAfr1|scaffold_12349 (39636-39778) | |
| 2-150, gnl|mm7|chr19 (45979817-45979971) | |
| 2-150, gnl|Mm7|chr19 (45979851-45979999) | |
| 2-150, gnl|mm7|chrX (19795614-19795748) | |
| 2-150, gnl|monDom2|scaffold_14 (61255213-61255080) | |
| 2-150, gnl|monDom2|scaffold_26 (41018946-41018788) | |
| 2-150, gnl|oryCun1|scaffold_204270 (4236-4092) | |
| 2-150, gnl|oryCun1|scaffold_204270 (4233-4075) | |
| 2-150, gnl|panTro1|chr7 (141761359-141761495) | |
| 2-150, gnl|panTro1|chr8 (105671004-105671158) | |
| 2-150, gnl|rheMac2|chr8 (140207868-140208004) | |
| 2-150, gnl|rheMac2|chr9 (101820719-101820873) | |
| 2-150, gnl|rn3|chr1 (251566296-251566430) | |
| 2-150, gnl|rn3|chr1 (251566299-251566447) | |
| 2-150, gnl|xenTro1|scaffold_507 (631738-631889) | |
| 347-995, gnl|bosTau2|chr26 (15320736-15321365) | |
| 347-995, gnl|canFam2|chr28 (17698744-17698032) | |
| 347-995, gnl|dasNov1|scaffold_45634 (11968-11239) | |
| 347-995, gnl|echTel1|scaffold_294327 (40425-39711) | |
| 347-995, gnl|Hg17|chr10 (103911856-103912502) | |
| 347-995, gnl|hg17|chr4 (106274914-106275647) | |
| 347-995, gnl|loxAfr1|scaffold_12349 (41514-40803) | |
| 347-995, gnl|Mm7|chr19 (45980644-45981216) | |
| 347-995, gnl|mm7|chrX (19796892-19796188) | |
| 347-995, gnl|oryCun1|scaffold_204270 (2476-3177) | |
| 347-995, gnl|panTro1|chr3 (122683475-122684209) | |
| 347-995, gnl|rheMac2|chr5 (98062460-98063194) | |
| 347-995, gnl|rn3|chrX (72025597-72026299) | |
| 1148-1380, gnl|bosTau2|chr26 (15321394-15321621) | |
| 1148-1380, gnl|canFam2|chr28 (17699019-17698546) | |
| 1148-1380, gnl|canFam2|chr28 (17698451-17698693) | |
| 1148-1380, gnl|dasNov1|scaffold_45634 (12380-11764) | |
| 1148-1380, gnl|dasNov1|scaffold_45634 (11659-11913) | |
| 1148-1380, gnl|echTel1|scaffold_294327 (40774-40225) | |
| 1148-1380, gnl|echTel1|scaffold_294327 (40130-40369) | |
| 1148-1380, gnl|hg17|chr1 (85659852-85660345) | |
| 1148-1380, gnl|hg17|chr10 (103912443-103912698) | |
| 1148-1380, gnl|Hg17|chr10 (103912525-103912775) | |
| 1148-1380, gnl|loxAfr1|scaffold_12349 (41887-41309) | |
| 1148-1380, gnl|loxAfr1|scaffold_12349 (41217-41462) | |
| 1148-1380, gnl|mm7|chr19 (45981192-45981421) | |
| 1148-1380, gnl|Mm7|chr19 (45981241-45981490) | |
| 1148-1380, gnl|mm7|chrX (19797097-19796678) | |
| 1148-1380, gnl|oryCun1|scaffold_204270 (2188-2688) | |
| 1148-1380, gnl|oryCun1|scaffold_204270 (2782-2534) | |
| 1148-1380, gnl|panTro1|chr1 (84337831-84338324) | |
| 1148-1380, gnl|panTro1|chr8 (105672784-105673039) | |
| 1148-1380, gnl|rheMac2|chr1 (88265016-88265510) | |
| 1148-1380, gnl|rheMac2|chr9 (101822494-101822748) | |
| 1148-1380, gnl|rn3|chr1 (251567647-251567903) | |
| 1148-1380, gnl|rn3|chrX (72025395-72025812) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ill (0.351185) | |
| duo (0.345602) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ill (0.351185) | |
| duo (0.345602) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) |