Non-Coding RNA Search

Ss1.1-Pig4-TMW8068M18.3

Sequence:


               
               AAACAGACAGGCGAGAAGTCCGAGGGGAACGAGATGAGAGGAGAACAGTGATCATTCATG
ACAGGCCTGATATCACTCACGCTAGACATCCTCGAGAAGGAGGGCCCAATCCCTCCAGAC
CAAACTCCTGGAAGAGTGAAGGAGGCATGTCCACCGACAAACGGGAAACAAGAGTTGAAA
GGCCAGAACGATCTGGGAGAGACGTATCAGGGCACAGTGTGAGAGGGGCTCCCCCTGGAA
GTCGCAGTAATGCCTCAGGCTATGGAAGCAGAGAGGGAGACAGAGGAGTAATCACAGACC
GAGGAAGTGGAGCACAGCACTATCCCGAAGAACGGCATGTGGTTGAACGCCATGGACGGG
ACACAAGTGGACCAAGGAAAGAATGGCATGGTCCCCCTTCTCAAGGGCCTAGCTATCATG
ATACGAGGCGAATGGGCGATAGCCGAACAGGAGCAGGCATGATAACACAGCATACAAGTA
ATGCATCCCCAATTAATAGAATTGTACAAATCAGTGGCAATTCCATGCCAAGAGGAAGTG
GCTCTGGATTTAAGCCATTTAAGGGTGGACCTCCTCGACGATTCTGAAAACTAGCTCTCT
GCCATGGTTTCAAGATAATTTATTGAAATCTCCTGTAAACTTTACTTGACTACTTATGAA
GAGGACCTCTGACTTGCTTGAGAGTTCTGTCAGACTTTTCTTTTTTTCTCTTTTTTTTTT
AAATTTAACACGATTGCTTTTCTCAATTTTGGAGAAGCTGTTTAGTTCTGTTGTAACTTT
TAATAGTTTTGTGTATCATTCAACTTTTTTCCTTGCAGCACTGAGACACATTTGAAAGAT
AGGAATCAAAACCATTTTGTTTAATGCTGTGTGAATATAAAGAGTAGTTTACAGGTGTGT
GGTAGTAGTTTAATTTGCAGCATTAGCTCTGTGGTGTCAGGCTCTAGAGTTACTTTTTGT
CATCAAGCATTTTCAGCCTCCATTTTGAAGGCTGTTTAAGCTTAAAAAGTCTGCTGTTTA
ATTTTTAGAGAATAAGATTGTTCCTTGCATTTCTGAGTATTATGTAACCTATTTTTGCAG
AAGGTACTGTTACATTAAGTGCATCTGTGTATCCTGGTTTTAAAAAAAATGTACTCTTTT
TTGAAATAAACCTTCATATTCTGTATAGTTGCTAAAGCGTTGAGAACCTTTTTAATTGTA
AAATGAGAACCAAATTTCAGTTCATTATAGCAGCACACTTGTTCAGGTTTGCATGGTGTG
AAACCAAATAGATTAATGAAACCTTGGCCATGAGGTTTGTATCACTGAGGTTCTTAGACT
GAGTTGTGCAGGTAAGTGCACTTTTAGGTAATCTGCACTGTTTGATGGATAAATTCCATC
TCTGGGAATTGTGTGGGTATTAATATTTCCATGTTCTCAACTATGTTGAGAAGTGGAAAA
AACCCAGGTTCTAGATTGGTGAATCAGTTGGGTTTTGTAAATACTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAGACAGGCGAGAAGTCCGAGGGGAACGAGATGAGAGGAGAACAGTGATCATTCATG
ACAGGCCTGATATCACTCACGCTAGACATCCTCGAGAAGGAGGGCCCAATCCCTCCAGAC
CAAACTCCTGGAAGAGTGAAGGAGGCATGTCCACCGACAAACGGGAAACAAGAGTTGAAA
GGCCAGAACGATCTGGGAGAGACGTATCAGGGCACAGTGTGAGAGGGGCTCCCCCTGGAA
GTCGCAGTAATGCCTCAGGCTATGGAAGCAGAGAGGGAGACAGAGGAGTAATCACAGACC
GAGGAAGTGGAGCACAGCACTATCCCGAAGAACGGCATGTGGTTGAACGCCATGGACGGG
ACACAAGTGGACCAAGGAAAGAATGGCATGGTCCCCCTTCTCAAGGGCCTAGCTATCATG
ATACGAGGCGAATGGGCGATAGCCGAACAGGAGCAGGCATGATAACACAGCATACAAGTA
ATGCATCCCCAATTAATAGAATTGTACAAATCAGTGGCAATTCCATGCCAAGAGGAAGTG
GCTCTGGATTTAAGCCATTTAAGGGTGGACCTCCTCGACGATTCTGAAAACTAGCTCTCT
GCCATGGTTTCAAGATAATTTATTGAAATCTCCTGTAAACTTTACTTGACTACTTATGAA
GAGGACCTCTGACTTGCTTGAGAGTTCTGTCAGACTTTTCTTTTTTTCTCTTTTTTTTTT
AAATTTAACACGATTGCTTTTCTCAATTTTGGAGAAGCTGTTTAGTTCTGTTGTAACTTT
TAATAGTTTTGTGTATCATTCAACTTTTTTCCTTGCAGCACTGAGACACATTTGAAAGAT
AGGAATCAAAACCATTTTGTTTAATGCTGTGTGAATATAAAGAGTAGTTTACAGGTGTGT
GGTAGTAGTTTAATTTGCAGCATTAGCTCTGTGGTGTCAGGCTCTAGAGTTACTTTTTGT
CATCAAGCATTTTCAGCCTCCATTTTGAAGGCTGTTTAAGCTTAAAAAGTCTGCTGTTTA
ATTTTTAGAGAATAAGATTGTTCCTTGCATTTCTGAGTATTATGTAACCTATTTTTGCAG
AAGGTACTGTTACATTAAGTGCATCTGTGTATCCTGGTTTTAAAAAAAATGTACTCTTTT
TTGAAATAAACCTTCATATTCTGTATAGTTGCTAAAGCGTTGAGAACCTTTTTAATTGTA
AAATGAGAACCAAATTTCAGTTCATTATAGCAGCACACTTGTTCAGGTTTGCATGGTGTG
AAACCAAATAGATTAATGAAACCTTGGCCATGAGGTTTGTATCACTGAGGTTCTTAGACT
GAGTTGTGCAGGTAAGTGCACTTTTAGGTAATCTGCACTGTTTGATGGATAAATTCCATC
TCTGGGAATTGTGTGGGTATTAATATTTCCATGTTCTCAACTATGTTGAGAAGTGGAAAA
AACCCAGGTTCTAGATTGGTGAATCAGTTGGGTTTTGTAAATACTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62653879|ref|XP_236381.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62653879|ref|XP_236381.3|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               911-1028, - strand, RNAz p=0.998863
               

               
               1269-1488, + strand, RNAz p=0.998374

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               911-1028, - strand, RNAz p=0.998863
               

               
               1269-1488, + strand, RNAz p=0.998374

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024755, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024755, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               21-172, gnl|bosTau2|chr28 (31531793-31531642)
               

               
               21-172, gnl|canFam2|chr30 (26856368-26856491)
               

               
               21-172, gnl|danRer3|chr7 (21264587-21264723)
               

               
               21-172, gnl|dasNov1|scaffold_86448 (8583-8457)
               

               
               21-172, gnl|echTel1|scaffold_315390 (44980-45107)
               

               
               21-172, gnl|fr1|chrUn (81403168-81403078)
               

               
               21-172, gnl|galGal2|chr10 (7667584-7667471)
               

               
               21-172, gnl|hg17|chr15 (56966701-56966828)
               

               
               21-172, gnl|Hg17|chr15 (56966868-56966717)
               

               
               21-172, gnl|loxAfr1|scaffold_6622 (48471-48599)
               

               
               21-172, gnl|mm7|chr9 (70618920-70618790)
               

               
               21-172, gnl|Mm7|chr9 (70618748-70618899)
               

               
               21-172, gnl|monDom2|scaffold_12 (37244806-37244935)
               

               
               21-172, gnl|oryCun1|scaffold_198530 (149777-149647)
               

               
               21-172, gnl|panTro1|chr16 (57380782-57380909)
               

               
               21-172, gnl|rheMac2|chr7 (37251891-37252018)
               

               
               21-172, gnl|rn3|chr8 (75080902-75080772)
               

               
               21-172, gnl|xenTro1|scaffold_297 (705146-705308)
               


               
               477-1488, gnl|bosTau2|chr28 (31527126-31526106)
               

               
               477-1488, gnl|Hg17|chr15 (56959600-56958594)
               

               
               477-1488, gnl|Mm7|chr9 (70623527-70624490)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-172, gnl|bosTau2|chr28 (31531793-31531642)
               

               
               21-172, gnl|canFam2|chr30 (26856368-26856491)
               

               
               21-172, gnl|danRer3|chr7 (21264587-21264723)
               

               
               21-172, gnl|dasNov1|scaffold_86448 (8583-8457)
               

               
               21-172, gnl|echTel1|scaffold_315390 (44980-45107)
               

               
               21-172, gnl|fr1|chrUn (81403168-81403078)
               

               
               21-172, gnl|galGal2|chr10 (7667584-7667471)
               

               
               21-172, gnl|hg17|chr15 (56966701-56966828)
               

               
               21-172, gnl|Hg17|chr15 (56966868-56966717)
               

               
               21-172, gnl|loxAfr1|scaffold_6622 (48471-48599)
               

               
               21-172, gnl|mm7|chr9 (70618920-70618790)
               

               
               21-172, gnl|Mm7|chr9 (70618748-70618899)
               

               
               21-172, gnl|monDom2|scaffold_12 (37244806-37244935)
               

               
               21-172, gnl|oryCun1|scaffold_198530 (149777-149647)
               

               
               21-172, gnl|panTro1|chr16 (57380782-57380909)
               

               
               21-172, gnl|rheMac2|chr7 (37251891-37252018)
               

               
               21-172, gnl|rn3|chr8 (75080902-75080772)
               

               
               21-172, gnl|xenTro1|scaffold_297 (705146-705308)
               


               
               477-1488, gnl|bosTau2|chr28 (31527126-31526106)
               

               
               477-1488, gnl|Hg17|chr15 (56959600-56958594)
               

               
               477-1488, gnl|Mm7|chr9 (70623527-70624490)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               tes (0.831255)
               

               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               pro (0.512033)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	911-1028, - strand, RNAz p=0.998863
	1269-1488, + strand, RNAz p=0.998374

	21-172, gnl\|bosTau2\|chr28 (31531793-31531642)
	21-172, gnl\|canFam2\|chr30 (26856368-26856491)
	21-172, gnl\|danRer3\|chr7 (21264587-21264723)
	21-172, gnl\|dasNov1\|scaffold_86448 (8583-8457)
	21-172, gnl\|echTel1\|scaffold_315390 (44980-45107)
	21-172, gnl\|fr1\|chrUn (81403168-81403078)
	21-172, gnl\|galGal2\|chr10 (7667584-7667471)
	21-172, gnl\|hg17\|chr15 (56966701-56966828)
	21-172, gnl\|Hg17\|chr15 (56966868-56966717)
	21-172, gnl\|loxAfr1\|scaffold_6622 (48471-48599)
	21-172, gnl\|mm7\|chr9 (70618920-70618790)
	21-172, gnl\|Mm7\|chr9 (70618748-70618899)
	21-172, gnl\|monDom2\|scaffold_12 (37244806-37244935)
	21-172, gnl\|oryCun1\|scaffold_198530 (149777-149647)
	21-172, gnl\|panTro1\|chr16 (57380782-57380909)
	21-172, gnl\|rheMac2\|chr7 (37251891-37252018)
	21-172, gnl\|rn3\|chr8 (75080902-75080772)
	21-172, gnl\|xenTro1\|scaffold_297 (705146-705308)

	477-1488, gnl\|bosTau2\|chr28 (31527126-31526106)
	477-1488, gnl\|Hg17\|chr15 (56959600-56958594)
	477-1488, gnl\|Mm7\|chr9 (70623527-70624490)

	tes (0.831255)
	pro (0.512033)
	liv (0.292569)
	sug (0.254582)
	ece (0.229305)
	nms (0.213858)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	cut (0.169924)
	hyp (0.142837)
	pla (0.133672)
	ese (0.126502)
	bla (0.124347)
	ebs (0.118301)
	cbl (0.114797)
	nbm (0.0993246)