Ss1.1-Pig4-TMW8068N20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCCGGCTGGCTGGCAGCCGATCGGGGACTGCTCTTTCTGCTGCCCAGAGAGGCCCGC TAGTTTCCTGTCGGAGGTGGGCCGGCGCCACGGCTGACACCGTGTATGATGTTGTGGTGT CGGGTGGAGGCATGGTGGGCGCCGCTATGGCCTGTGCCTTGGGACATGATATTCACTTTG GTGACAAGAAAATTCTGTTGCTAGAAGCAGGTCCAAAGAAAGTATTGGGGAAATTACCAG AAACTTACAGCAACAGGGTCAGCTCCATTTCCCCTGGCTCTGCAACCCTTCTCAGTAGTT TTGGTGCCTGGGACCACATCTGCAACATGAGATACAGAGCCTTTCGGCGAATGCAGGTGT GGGATGCCTGCTCCGAGGCCCTGATCATGTTTGACAAGGATAATTTAGATGACATGGGCT ATATCGTGGAGAATGATGTCATCATGCAGGCCCTCACGAAGCAGCTGGAGGCTGTGTCAG ACCGAGTGACCGTTCTCTACAAGAGCAAAGCAGTCAGCTATACCTGGCCTTACCCATTTT CCATGGCAGACTCCAGCCCTTGGGTTCATATTACCCTAGGTGATGGCAGCACCCTCCAGA CCAAATTGTTGATTGGTGCTGATGGTCACAACTCAGGAGTACGGCAGGCTGCTGGAATCC GGGATGTTAGCTGGAACTATGACCAGTCCGCTGTTGTGGCTACTTTGCATTTATCAGAGC CCACGGAAAACAATGTAGCTTGGCAGAGATTTCTTCCGTCTGGGCCCATTGCTCTGCTCC CGCTCTCGGACACTTTGAGTTCCTTGGTTTGGTCCACATCCCATGAACACGCAGCAGAGC TGGTCAGTATGGATGAGGAAAAGTTTGTGGATGCCATTAACTCTGCCTTTTGGAGTGATG CTAACCACACAGACCTCGTCGACTCGGCCAGCTCCGTGCTGCACTATGTGGTTTCCATTC TGAAGCCCACTAAGGTCTCAGCTCGCCAGCTGCCCCCAAGTGTAGCCAAGGTGGATGCCA AAAGCCGGGTACTGTTTCCTCTTGGGTTGGGACACGCTGCTGAGTACGTCCGGCCTCGGC TGGCACTCATTGGGGATGCCGCCCACAGAGTCCACCCACTTGCAGGACAAGGTGTCAACA TGGGCTTTGGGGATATCTCCAGCTTGGTCCATCACCTCAGAACTGCAGCCTTCAACGGGA AAGACTTAGGCTCCATGAGCCACCTCACAGGTTATGAAACAGACAGACAACGTCACAACA CTGCTCTTCTGGCTGCTACTGACCTACTCAAAAGGCTCTATTCCACCAGTGCCACCCCAC TTGTGCTGCTCAGGACGTGGGGCTTGCAAGCTACAAATGCAGTATCTCCACTCAAAGAGC AGATTATGGCCTTTGCAAGCAAATGAATGCTCTTCTTCCGGAGATTCTGAACATCTTTTC CCAAGACCATCACATATTTTCAGGATTTAATTTAATAAATTTACTTTACATTAGAATGTC AGTCTTGGAGTTCCCATATGGCACGGTGGAAACGAATCTGACTAGGAATCATGAGGTTTT GGGTTCGATTCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGTGTTTCTATGAGCTGCAGT GTAGGTCGAAGACATGGTTCAGATCCTGCATTGCGGTAGTGTAGGCCAGCAGTTGTAGCT CCAATTTGACCCCTAGCCTGGGAACCTCCATATGCCACAAGTATGACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCCGGCTGGCTGGCAGCCGATCGGGGACTGCTCTTTCTGCTGCCCAGAGAGGCCCGC TAGTTTCCTGTCGGAGGTGGGCCGGCGCCACGGCTGACACCGTGTATGATGTTGTGGTGT CGGGTGGAGGCATGGTGGGCGCCGCTATGGCCTGTGCCTTGGGACATGATATTCACTTTG GTGACAAGAAAATTCTGTTGCTAGAAGCAGGTCCAAAGAAAGTATTGGGGAAATTACCAG AAACTTACAGCAACAGGGTCAGCTCCATTTCCCCTGGCTCTGCAACCCTTCTCAGTAGTT TTGGTGCCTGGGACCACATCTGCAACATGAGATACAGAGCCTTTCGGCGAATGCAGGTGT GGGATGCCTGCTCCGAGGCCCTGATCATGTTTGACAAGGATAATTTAGATGACATGGGCT ATATCGTGGAGAATGATGTCATCATGCAGGCCCTCACGAAGCAGCTGGAGGCTGTGTCAG ACCGAGTGACCGTTCTCTACAAGAGCAAAGCAGTCAGCTATACCTGGCCTTACCCATTTT CCATGGCAGACTCCAGCCCTTGGGTTCATATTACCCTAGGTGATGGCAGCACCCTCCAGA CCAAATTGTTGATTGGTGCTGATGGTCACAACTCAGGAGTACGGCAGGCTGCTGGAATCC GGGATGTTAGCTGGAACTATGACCAGTCCGCTGTTGTGGCTACTTTGCATTTATCAGAGC CCACGGAAAACAATGTAGCTTGGCAGAGATTTCTTCCGTCTGGGCCCATTGCTCTGCTCC CGCTCTCGGACACTTTGAGTTCCTTGGTTTGGTCCACATCCCATGAACACGCAGCAGAGC TGGTCAGTATGGATGAGGAAAAGTTTGTGGATGCCATTAACTCTGCCTTTTGGAGTGATG CTAACCACACAGACCTCGTCGACTCGGCCAGCTCCGTGCTGCACTATGTGGTTTCCATTC TGAAGCCCACTAAGGTCTCAGCTCGCCAGCTGCCCCCAAGTGTAGCCAAGGTGGATGCCA AAAGCCGGGTACTGTTTCCTCTTGGGTTGGGACACGCTGCTGAGTACGTCCGGCCTCGGC TGGCACTCATTGGGGATGCCGCCCACAGAGTCCACCCACTTGCAGGACAAGGTGTCAACA TGGGCTTTGGGGATATCTCCAGCTTGGTCCATCACCTCAGAACTGCAGCCTTCAACGGGA AAGACTTAGGCTCCATGAGCCACCTCACAGGTTATGAAACAGACAGACAACGTCACAACA CTGCTCTTCTGGCTGCTACTGACCTACTCAAAAGGCTCTATTCCACCAGTGCCACCCCAC TTGTGCTGCTCAGGACGTGGGGCTTGCAAGCTACAAATGCAGTATCTCCACTCAAAGAGC AGATTATGGCCTTTGCAAGCAAATGAATGCTCTTCTTCCGGAGATTCTGAACATCTTTTC CCAAGACCATCACATATTTTCAGGATTTAATTTAATAAATTTACTTTACATTAGAATGTC AGTCTTGGAGTTCCCATATGGCACGGTGGAAACGAATCTGACTAGGAATCATGAGGTTTT GGGTTCGATTCCTGGCCTCGCTCAGTGGGTTAAGGATCTGGTGTTTCTATGAGCTGCAGT GTAGGTCGAAGACATGGTTCAGATCCTGCATTGCGGTAGTGTAGGCCAGCAGTTGTAGCT CCAATTTGACCCCTAGCCTGGGAACCTCCATATGCCACAAGTATGACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 159-1377, + strand, RNAz p=0.850216 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 159-1377, + strand, RNAz p=0.850216 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX248000, + |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 159-299, gnl|bosTau2|chr10 (60538660-60538800) | |
| 159-299, gnl|canFam2|chr8 (50216314-50216175) | |
| 159-299, gnl|dasNov1|scaffold_5010 (22872-22735) | |
| 159-299, gnl|Hg17|chr14 (73489887-73490027) | |
| 159-299, gnl|hg17|chr8 (27610836-27610965) | |
| 159-299, gnl|loxAfr1|scaffold_1035 (153623-153487) | |
| 159-299, gnl|mm7|chr12 (82366990-82366851) | |
| 159-299, gnl|Mm7|chr12 (82366849-82366989) | |
| 159-299, gnl|oryCun1|scaffold_187834 (89583-89444) | |
| 159-299, gnl|panTro1|chr7_random (19585544-19585673) | |
| 159-299, gnl|rheMac2|chr8 (27848344-27848473) | |
| 159-299, gnl|rn3|chr6 (108433149-108433010) | |
| 479-623, gnl|bosTau2|chr10 (60542432-60542576) | |
| 479-623, gnl|Hg17|chr14 (73494601-73494745) | |
| 479-623, gnl|Mm7|chr12 (82370222-82370366) | |
| 891-1094, gnl|bosTau2|chr10 (60544278-60544481) | |
| 891-1094, gnl|canFam2|chr8 (50225721-50225930) | |
| 891-1094, gnl|dasNov1|scaffold_5010 (29648-29857) | |
| 891-1094, gnl|echTel1|scaffold_280063 (48406-48197) | |
| 891-1094, gnl|fr1|chrUn (34929082-34928873) | |
| 891-1094, gnl|galGal2|chr5 (34563896-34564105) | |
| 891-1094, gnl|hg17|chr14 (73497630-73497839) | |
| 891-1094, gnl|Hg17|chr14 (73497629-73497832) | |
| 891-1094, gnl|loxAfr1|scaffold_1035 (160482-160692) | |
| 891-1094, gnl|mm7|chr12 (82372108-82372317) | |
| 891-1094, gnl|Mm7|chr12 (82372107-82372310) | |
| 891-1094, gnl|monDom2|scaffold_8 (60973864-60973657) | |
| 891-1094, gnl|oryCun1|scaffold_150544 (6393-6602) | |
| 891-1094, gnl|panTro1|chr15 (73276059-73276268) | |
| 891-1094, gnl|rheMac2|chr7 (137054818-137055027) | |
| 891-1094, gnl|rn3|chr6 (108438648-108438857) | |
| 891-1094, gnl|tetNig1|chr10 (4904203-4903994) | |
| 891-1094, gnl|xenTro1|scaffold_423 (606687-606476) | |
| 1208-1377, gnl|bosTau2|chr10 (60544838-60545007) | |
| 1208-1377, gnl|canFam2|chr8 (50226251-50226454) | |
| 1208-1377, gnl|dasNov1|scaffold_5010 (30190-30399) | |
| 1208-1377, gnl|echTel1|scaffold_280063 (47890-47686) | |
| 1208-1377, gnl|fr1|chrUn (34928581-34928383) | |
| 1208-1377, gnl|galGal2|chr5 (34565666-34565869) | |
| 1208-1377, gnl|hg17|chr14 (73498164-73498373) | |
| 1208-1377, gnl|Hg17|chr14 (73498191-73498360) | |
| 1208-1377, gnl|loxAfr1|scaffold_1035 (161026-161274) | |
| 1208-1377, gnl|mm7|chr12 (82372584-82372799) | |
| 1208-1377, gnl|Mm7|chr12 (82372617-82372786) | |
| 1208-1377, gnl|monDom2|scaffold_8 (60973362-60973174) | |
| 1208-1377, gnl|oryCun1|scaffold_150544 (6911-7143) | |
| 1208-1377, gnl|panTro1|chr15 (73276593-73276802) | |
| 1208-1377, gnl|rheMac2|chr7 (137055355-137055564) | |
| 1208-1377, gnl|rn3|chr6 (108439121-108439340) | |
| 1208-1377, gnl|tetNig1|chr10 (4903750-4903553) | |
| 1208-1377, gnl|xenTro1|scaffold_423 (606088-605831) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-299, gnl|bosTau2|chr10 (60538660-60538800) | |
| 159-299, gnl|canFam2|chr8 (50216314-50216175) | |
| 159-299, gnl|dasNov1|scaffold_5010 (22872-22735) | |
| 159-299, gnl|Hg17|chr14 (73489887-73490027) | |
| 159-299, gnl|hg17|chr8 (27610836-27610965) | |
| 159-299, gnl|loxAfr1|scaffold_1035 (153623-153487) | |
| 159-299, gnl|mm7|chr12 (82366990-82366851) | |
| 159-299, gnl|Mm7|chr12 (82366849-82366989) | |
| 159-299, gnl|oryCun1|scaffold_187834 (89583-89444) | |
| 159-299, gnl|panTro1|chr7_random (19585544-19585673) | |
| 159-299, gnl|rheMac2|chr8 (27848344-27848473) | |
| 159-299, gnl|rn3|chr6 (108433149-108433010) | |
| 479-623, gnl|bosTau2|chr10 (60542432-60542576) | |
| 479-623, gnl|Hg17|chr14 (73494601-73494745) | |
| 479-623, gnl|Mm7|chr12 (82370222-82370366) | |
| 891-1094, gnl|bosTau2|chr10 (60544278-60544481) | |
| 891-1094, gnl|canFam2|chr8 (50225721-50225930) | |
| 891-1094, gnl|dasNov1|scaffold_5010 (29648-29857) | |
| 891-1094, gnl|echTel1|scaffold_280063 (48406-48197) | |
| 891-1094, gnl|fr1|chrUn (34929082-34928873) | |
| 891-1094, gnl|galGal2|chr5 (34563896-34564105) | |
| 891-1094, gnl|hg17|chr14 (73497630-73497839) | |
| 891-1094, gnl|Hg17|chr14 (73497629-73497832) | |
| 891-1094, gnl|loxAfr1|scaffold_1035 (160482-160692) | |
| 891-1094, gnl|mm7|chr12 (82372108-82372317) | |
| 891-1094, gnl|Mm7|chr12 (82372107-82372310) | |
| 891-1094, gnl|monDom2|scaffold_8 (60973864-60973657) | |
| 891-1094, gnl|oryCun1|scaffold_150544 (6393-6602) | |
| 891-1094, gnl|panTro1|chr15 (73276059-73276268) | |
| 891-1094, gnl|rheMac2|chr7 (137054818-137055027) | |
| 891-1094, gnl|rn3|chr6 (108438648-108438857) | |
| 891-1094, gnl|tetNig1|chr10 (4904203-4903994) | |
| 891-1094, gnl|xenTro1|scaffold_423 (606687-606476) | |
| 1208-1377, gnl|bosTau2|chr10 (60544838-60545007) | |
| 1208-1377, gnl|canFam2|chr8 (50226251-50226454) | |
| 1208-1377, gnl|dasNov1|scaffold_5010 (30190-30399) | |
| 1208-1377, gnl|echTel1|scaffold_280063 (47890-47686) | |
| 1208-1377, gnl|fr1|chrUn (34928581-34928383) | |
| 1208-1377, gnl|galGal2|chr5 (34565666-34565869) | |
| 1208-1377, gnl|hg17|chr14 (73498164-73498373) | |
| 1208-1377, gnl|Hg17|chr14 (73498191-73498360) | |
| 1208-1377, gnl|loxAfr1|scaffold_1035 (161026-161274) | |
| 1208-1377, gnl|mm7|chr12 (82372584-82372799) | |
| 1208-1377, gnl|Mm7|chr12 (82372617-82372786) | |
| 1208-1377, gnl|monDom2|scaffold_8 (60973362-60973174) | |
| 1208-1377, gnl|oryCun1|scaffold_150544 (6911-7143) | |
| 1208-1377, gnl|panTro1|chr15 (73276593-73276802) | |
| 1208-1377, gnl|rheMac2|chr7 (137055355-137055564) | |
| 1208-1377, gnl|rn3|chr6 (108439121-108439340) | |
| 1208-1377, gnl|tetNig1|chr10 (4903750-4903553) | |
| 1208-1377, gnl|xenTro1|scaffold_423 (606088-605831) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cov (0.396458) | |
| fbs (0.350693) | |
| jej (0.296765) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ski (0.146735) | |
| liv (0.146284) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| fbs (0.350693) | |
| jej (0.296765) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ski (0.146735) | |
| liv (0.146284) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |