Non-Coding RNA Search

Ss1.1-Pig4-TMW8068N24.3

Sequence:


               
               CTTGAGTCCAAGGGAAGTCACCACAGTGCTGCAGACGGACTCTGCAGAGTATGCACAGCC
ACTTGTGGGAGGAATTGTTGGCACACTCCATCAGAGATCCACCTTTAAACCAGAAGAAGG
AAAAGAAGCCGGGTATGCTGACCTAGATCCTTACAGCTCTCCTGTGCAAGAAGTTTATCA
TGCCTATGCTGAACCACTCCCAATCACTGGGCCTGAGTACGCCACCCCAATTGTCATGGA
TATGTCCGGGCACCCCACAGGTTCAGTTGGTCTGCCCTCAACGTCCACTTTCAAAGCCAC
AGGAAACCAGCCTCCTGCTTTAGTGGGAACATACAACACTCTTCTCTCCAGGACTGATAG
CTGCTCTTCAGCCCGGGCCCAGTATGATACCCCAAAAGGTGGGAAGCCAGGCCCAAGTGC
CCCCGATGAATTGGTGTACCAGGTACCACAGAGCACACAGGAGGTGGCAGGAGCGGGGAG
GGATGGTGAATGTGATGTCTTTAAGGAAATCCTTTGAAGGTGATGCTGCTTTTTACAAAG
CATCATTTTAAAGCACATGGCCTTTTTTATTGTGTTAGTGGTAGTAATATATAGAACGTG
TTACATGATCTGTCACGGATGTGCTTGGGGGAAGCGTGAGGACCGAGGTACAGGAAGCTA
CTCATCTTGCTTTAAAAGTGTCATCATGGCACAGTTACCACTTGCTTGTTAAATTTCAGA
CTTCCTGTTTGTTACTACTGTAAAACATGATTTTAATACAGAAAAAGCTCCCTACTATGC
ACTTCAAGAGAATTAAAAATCACTGAGTATTTATTACCAATGCTGCAGGTACATTATGAA
CTCAAGATGGCTCTGTAAGCCTTTCTGGCAATAAGCATGGTACTCTTCGTAAAATGTCTA
ATGGCTTGAAATTCTGCTCTTTGTGAAAGGTGGGTACTATCATGATTTCTTCCTCTTCTC
TTCCCATATTGCATTCTGGATTAAAAAATCAGCAATACAATCATTGTTTTGATTATAGTC
ATATACACTTAGCCATCTTTGCTTAGGAAGATCTGTACTGGGAAACTGACCTCTAATGAG
GAGGGTGGTTTTTCACTTTCTGACACGGCTAAGAGCTTTAACCCTTCATCATCCATGACC
TGGTCTCATCCCTCCTTGTTTTACCTGGGGCCCGTGGTGGCCAGCCCCACTCTTCTGTTT
ATAAATGCTTGAGTGTTGTTTTCATGGGTGACCCTTGCTTTATCAGCCTCATTATTTCAG
ATCCCCTAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAGTCCAAGGGAAGTCACCACAGTGCTGCAGACGGACTCTGCAGAGTATGCACAGCC
ACTTGTGGGAGGAATTGTTGGCACACTCCATCAGAGATCCACCTTTAAACCAGAAGAAGG
AAAAGAAGCCGGGTATGCTGACCTAGATCCTTACAGCTCTCCTGTGCAAGAAGTTTATCA
TGCCTATGCTGAACCACTCCCAATCACTGGGCCTGAGTACGCCACCCCAATTGTCATGGA
TATGTCCGGGCACCCCACAGGTTCAGTTGGTCTGCCCTCAACGTCCACTTTCAAAGCCAC
AGGAAACCAGCCTCCTGCTTTAGTGGGAACATACAACACTCTTCTCTCCAGGACTGATAG
CTGCTCTTCAGCCCGGGCCCAGTATGATACCCCAAAAGGTGGGAAGCCAGGCCCAAGTGC
CCCCGATGAATTGGTGTACCAGGTACCACAGAGCACACAGGAGGTGGCAGGAGCGGGGAG
GGATGGTGAATGTGATGTCTTTAAGGAAATCCTTTGAAGGTGATGCTGCTTTTTACAAAG
CATCATTTTAAAGCACATGGCCTTTTTTATTGTGTTAGTGGTAGTAATATATAGAACGTG
TTACATGATCTGTCACGGATGTGCTTGGGGGAAGCGTGAGGACCGAGGTACAGGAAGCTA
CTCATCTTGCTTTAAAAGTGTCATCATGGCACAGTTACCACTTGCTTGTTAAATTTCAGA
CTTCCTGTTTGTTACTACTGTAAAACATGATTTTAATACAGAAAAAGCTCCCTACTATGC
ACTTCAAGAGAATTAAAAATCACTGAGTATTTATTACCAATGCTGCAGGTACATTATGAA
CTCAAGATGGCTCTGTAAGCCTTTCTGGCAATAAGCATGGTACTCTTCGTAAAATGTCTA
ATGGCTTGAAATTCTGCTCTTTGTGAAAGGTGGGTACTATCATGATTTCTTCCTCTTCTC
TTCCCATATTGCATTCTGGATTAAAAAATCAGCAATACAATCATTGTTTTGATTATAGTC
ATATACACTTAGCCATCTTTGCTTAGGAAGATCTGTACTGGGAAACTGACCTCTAATGAG
GAGGGTGGTTTTTCACTTTCTGACACGGCTAAGAGCTTTAACCCTTCATCATCCATGACC
TGGTCTCATCCCTCCTTGTTTTACCTGGGGCCCGTGGTGGCCAGCCCCACTCTTCTGTTT
ATAAATGCTTGAGTGTTGTTTTCATGGGTGACCCTTGCTTTATCAGCCTCATTATTTCAG
ATCCCCTAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884379|ref|XP_602937.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884379|ref|XP_602937.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-361, - strand, RNAz p=0.737025

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-361, - strand, RNAz p=0.737025

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               45-1272, gnl|bosTau2|chr1 (22647343-22646111)
               

               
               45-1272, gnl|Hg17|chr3 (100001380-100000139)
               

               
               45-1272, gnl|Mm7|chr16 (58401476-58402729)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1272, gnl|bosTau2|chr1 (22647343-22646111)
               

               
               45-1272, gnl|Hg17|chr3 (100001380-100000139)
               

               
               45-1272, gnl|Mm7|chr16 (58401476-58402729)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               eru (0.120048)

	45-1272, gnl\|bosTau2\|chr1 (22647343-22646111)
	45-1272, gnl\|Hg17\|chr3 (100001380-100000139)
	45-1272, gnl\|Mm7\|chr16 (58401476-58402729)

	aor (0.195274)
	fbs (0.175346)
	nje (0.16592)
	lun (0.150489)
	pla (0.133672)
	sug (0.127291)
	eru (0.120048)