Non-Coding RNA Search

Ss1.1-Pig4-TMW8068O05.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTGGCAGAATTATTCTCACTTTATTTCTGGAGAAATTTGA
TCAGATGCAATAACACTGATTCCAGGCGAGGGCAGGGGGCACGGGTACCCCTAAAGCAAC
CAGTATCCTGTGGCCCAAGGTGCCCCCATCCCCAGACCTGGGTTCCCCCTCAGATACAGT
TAAATAGAGGGAGGAAGATCTCCCCAGGGAGTCTTGGGAGGGTCTGCCTCCTGCACCCGC
CCCCTCCACGCAGAGGAGTCTGAGCACGAGCTATTTACAGTATTCACATCCACTGTACCC
CGCCCAAACCAAGGCAAATACTACAGGTGGCCCTTCCCCATGGGAGGAGGCCAGAGAGGC
TGTGAGTGTATGTGTGTGTATGCGGGTGTCCGCGCGTGTGAGCACACGAATGCACTGAGG
GGCAGGGTCTGGCTCCAGCCAAAGAGACATCAGTCTATAAGGTGCAGATTAAAAATAACA
GAGAGGACCCAACCCCCAGGGGCCCAGGCCACTTCCGGCTTTGTTCTGTCTCTTTCTCTT
CCAGACATCCTGGCAGATGATGCAGAGGAGCCCTCATAGCTGTGCCTGGATCCAAGGCAA
CCCCTTAAAGGACTTCTGTGACCTGGGGAGGCTGCACCACTGCTTTCTTGAGGAAGGCCT
CTGCCTCTGGGAAGGGCAGGAGAGCCTCTGGCGTTCGGCCCAGACTCTTGTCCCCAGAGG
GCCCCTTAGGGGAGAAGCCATTCTCCTGGTGCGCTGGGAGAGGCTGCAGGCCGTTCACCA
GGGACCCTGGCGACTCCTTGTTTGGCAGGCTCCACTGAGGCTCCTGGGGGACCAGCTCCT
CTTTCTGTACAGCCTCCTTCTGCAGCCCTGAGGGTCGAGCCTCCATGGCTTTCGCAGGGT
CTATCACTGGGCTGGAATTGTTGGTCTTGGCCTCCTTTCTGTCCTGCTTCTTGGTTTCAG
CAGCTTCTGACTTTCGAGTCCTCTTCATGATCTCCTCCAGGCGCTTTTTGCGCTCTTGCC
GCTCTTGCTCCTCCCGCTGGAAGTGCTTCTCCCGCTCCAGACGCTGCCGCTCCGCTTCCT
CTCGGGATCGAGCTTCGGCCTCCTCTTTCTGCTTCTGCAGTCGCTCCTGCTCCTCCTGCT
CGGCTTGCGCCTTCTCCCGGGCCTCCTGCTCCTCCCGCCTCCGGGCCTCCGCTTCCCGCT
CTGCCCGGGCCTCGGCCTCCCGAGCCAGCTGCTCCTCTCGCAATCGTTTGTCCCTTTCCG
CCTGCAGTCTCCGCTCCTGTTCCTCGCGCTCCCGCTGCTCCCGGGCCTGGCGCCGCTTCT
CAGCCAGGAGCCGAGTGGCCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTGGCAGAATTATTCTCACTTTATTTCTGGAGAAATTTGA
TCAGATGCAATAACACTGATTCCAGGCGAGGGCAGGGGGCACGGGTACCCCTAAAGCAAC
CAGTATCCTGTGGCCCAAGGTGCCCCCATCCCCAGACCTGGGTTCCCCCTCAGATACAGT
TAAATAGAGGGAGGAAGATCTCCCCAGGGAGTCTTGGGAGGGTCTGCCTCCTGCACCCGC
CCCCTCCACGCAGAGGAGTCTGAGCACGAGCTATTTACAGTATTCACATCCACTGTACCC
CGCCCAAACCAAGGCAAATACTACAGGTGGCCCTTCCCCATGGGAGGAGGCCAGAGAGGC
TGTGAGTGTATGTGTGTGTATGCGGGTGTCCGCGCGTGTGAGCACACGAATGCACTGAGG
GGCAGGGTCTGGCTCCAGCCAAAGAGACATCAGTCTATAAGGTGCAGATTAAAAATAACA
GAGAGGACCCAACCCCCAGGGGCCCAGGCCACTTCCGGCTTTGTTCTGTCTCTTTCTCTT
CCAGACATCCTGGCAGATGATGCAGAGGAGCCCTCATAGCTGTGCCTGGATCCAAGGCAA
CCCCTTAAAGGACTTCTGTGACCTGGGGAGGCTGCACCACTGCTTTCTTGAGGAAGGCCT
CTGCCTCTGGGAAGGGCAGGAGAGCCTCTGGCGTTCGGCCCAGACTCTTGTCCCCAGAGG
GCCCCTTAGGGGAGAAGCCATTCTCCTGGTGCGCTGGGAGAGGCTGCAGGCCGTTCACCA
GGGACCCTGGCGACTCCTTGTTTGGCAGGCTCCACTGAGGCTCCTGGGGGACCAGCTCCT
CTTTCTGTACAGCCTCCTTCTGCAGCCCTGAGGGTCGAGCCTCCATGGCTTTCGCAGGGT
CTATCACTGGGCTGGAATTGTTGGTCTTGGCCTCCTTTCTGTCCTGCTTCTTGGTTTCAG
CAGCTTCTGACTTTCGAGTCCTCTTCATGATCTCCTCCAGGCGCTTTTTGCGCTCTTGCC
GCTCTTGCTCCTCCCGCTGGAAGTGCTTCTCCCGCTCCAGACGCTGCCGCTCCGCTTCCT
CTCGGGATCGAGCTTCGGCCTCCTCTTTCTGCTTCTGCAGTCGCTCCTGCTCCTCCTGCT
CGGCTTGCGCCTTCTCCCGGGCCTCCTGCTCCTCCCGCCTCCGGGCCTCCGCTTCCCGCT
CTGCCCGGGCCTCGGCCTCCCGAGCCAGCTGCTCCTCTCGCAATCGTTTGTCCCTTTCCG
CCTGCAGTCTCCGCTCCTGTTCCTCGCGCTCCCGCTGCTCCCGGGCCTGGCGCCGCTTCT
CAGCCAGGAGCCGAGTGGCCTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q91YQ4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91YQ4_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               61-511, - strand, RNAz p=0.940068

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-511, - strand, RNAz p=0.940068

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC003083, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC003083, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               22-618, gnl|bosTau2|chr3 (76716107-76716705)
               

               
               22-618, gnl|Hg17|chr1 (36315542-36314939)
               

               
               22-618, gnl|Mm7|chr4 (125676816-125677416)
               


               
               1004-1308, gnl|bosTau2|chr3 (76717940-76718254)
               

               
               1004-1308, gnl|Hg17|chr1 (36313719-36313414)
               

               
               1004-1308, gnl|Mm7|chr4 (125678540-125678848)
               


               
               1109-1246, gnl|bosTau2|chr3 (76718151-76718288)
               

               
               1109-1246, gnl|Hg17|chr1 (36313517-36313380)
               

               
               1109-1246, gnl|Mm7|chr4 (125678745-125678882)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-618, gnl|bosTau2|chr3 (76716107-76716705)
               

               
               22-618, gnl|Hg17|chr1 (36315542-36314939)
               

               
               22-618, gnl|Mm7|chr4 (125676816-125677416)
               


               
               1004-1308, gnl|bosTau2|chr3 (76717940-76718254)
               

               
               1004-1308, gnl|Hg17|chr1 (36313719-36313414)
               

               
               1004-1308, gnl|Mm7|chr4 (125678540-125678848)
               


               
               1109-1246, gnl|bosTau2|chr3 (76718151-76718288)
               

               
               1109-1246, gnl|Hg17|chr1 (36313517-36313380)
               

               
               1109-1246, gnl|Mm7|chr4 (125678745-125678882)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               hyp (0.42851)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	22-618, gnl\|bosTau2\|chr3 (76716107-76716705)
	22-618, gnl\|Hg17\|chr1 (36315542-36314939)
	22-618, gnl\|Mm7\|chr4 (125676816-125677416)

	1004-1308, gnl\|bosTau2\|chr3 (76717940-76718254)
	1004-1308, gnl\|Hg17\|chr1 (36313719-36313414)
	1004-1308, gnl\|Mm7\|chr4 (125678540-125678848)

	1109-1246, gnl\|bosTau2\|chr3 (76718151-76718288)
	1109-1246, gnl\|Hg17\|chr1 (36313517-36313380)
	1109-1246, gnl\|Mm7\|chr4 (125678745-125678882)

	hyp (0.42851)
	ecc (0.23007)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	ton (0.1755)
	fbs (0.175346)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)