Non-Coding RNA Search

Ss1.1-Pig4-TMW8068O07.3

Sequence:


               
               TTACTGTTGTTTAAGAAATACATAACCTGCCAACACATATACTTTAACAGTGTAGAGAAA
ACTGTACTTCAAAATTCCCACTTAGTGTGGCTACATTAAATAGTGACAAACACGAGAGCC
TTTTTTCAAGATGCCTTTACTTAATTGCATTAGGATATTGGTACATGCTCCAAATAAGAA
AAAAAATAAGTTTCAGTGGACTAAGTATTTAGCAAAGTGCAAGAAAATTCCATGTTCTGG
TTCTTTTGGAAAGCAACTTCTATTGCATTGTGGATGGTTAGGATGTAATTAATTGAACTC
TTATTTATAGTCCTTATTTTGTGGAGTGCCCGAGTGTACAGTGTGAGAACCATGGTGTCT
CAATATTTTAATTGTTAATTTTTCTCAGTTTAGTTATCTTCGAATGAAATGTCTAAAATA
CACTTTTGTCCTTAATATTGAAAGAGTCATCTTTCTTGGTTTTGACATTTAAGAATTGGA
GTACTTTGCAAAGATATATATTAAAATCTTCCTAGAAGTGTAGAAATAGATATGCCATAT
ATTACATAAAGCATATGTGTGTAGAATGTGCCTACATCCAGGTGTGATGTATACTTTCAT
TCACTTTGGAGCTTGCCTTGCCAGGTAATTTTTGTTACGACAGAGGCTTAAAACTATTGT
ATGCTTTTTAGACCTATACTATGTAGTGAATATTTTAATTTACTGGATTTAGACTATGCT
ACATGTACTCTCTACACATTTGTTACTATATTAATTACTCTTTGTAAAACAAGGGAAAAT
AACCACATGTCACATACACACATCAATAATCTTTGTTAACAGTGATGGCATGGCCATCCC
TTGAATGTCTTTTTTGAGTTTAGAGATGTTGTTCTGTAAGGCAGAGAGAGGGAATCAGCA
CAGCTCACATTAGTTTAGGAATAGATTGAATTTACAGCTTACTAAGGGAACATGGCTATC
TTGTGTATAGTTTCACCCTTGTGTGATTTCTTTACCTTAAATCTGGGAAGAGAACCATTG
TAGAAAATAAAAAAAATTCTCTCTGAGACATGGGAATAAGAATCTATCATGAAATTTTAA
GAGTTTTAGTGATATTGACTAAGGTTCCTAATTAAGTTGTTAGGTGTAATTTTGGGAATG
TGTTTCAGAAATAATATTTGTTCCTAATTCTGCTGATTCAGCATCAGCCTAAAATCCAAT
AAACTTGTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACTGTTGTTTAAGAAATACATAACCTGCCAACACATATACTTTAACAGTGTAGAGAAA
ACTGTACTTCAAAATTCCCACTTAGTGTGGCTACATTAAATAGTGACAAACACGAGAGCC
TTTTTTCAAGATGCCTTTACTTAATTGCATTAGGATATTGGTACATGCTCCAAATAAGAA
AAAAAATAAGTTTCAGTGGACTAAGTATTTAGCAAAGTGCAAGAAAATTCCATGTTCTGG
TTCTTTTGGAAAGCAACTTCTATTGCATTGTGGATGGTTAGGATGTAATTAATTGAACTC
TTATTTATAGTCCTTATTTTGTGGAGTGCCCGAGTGTACAGTGTGAGAACCATGGTGTCT
CAATATTTTAATTGTTAATTTTTCTCAGTTTAGTTATCTTCGAATGAAATGTCTAAAATA
CACTTTTGTCCTTAATATTGAAAGAGTCATCTTTCTTGGTTTTGACATTTAAGAATTGGA
GTACTTTGCAAAGATATATATTAAAATCTTCCTAGAAGTGTAGAAATAGATATGCCATAT
ATTACATAAAGCATATGTGTGTAGAATGTGCCTACATCCAGGTGTGATGTATACTTTCAT
TCACTTTGGAGCTTGCCTTGCCAGGTAATTTTTGTTACGACAGAGGCTTAAAACTATTGT
ATGCTTTTTAGACCTATACTATGTAGTGAATATTTTAATTTACTGGATTTAGACTATGCT
ACATGTACTCTCTACACATTTGTTACTATATTAATTACTCTTTGTAAAACAAGGGAAAAT
AACCACATGTCACATACACACATCAATAATCTTTGTTAACAGTGATGGCATGGCCATCCC
TTGAATGTCTTTTTTGAGTTTAGAGATGTTGTTCTGTAAGGCAGAGAGAGGGAATCAGCA
CAGCTCACATTAGTTTAGGAATAGATTGAATTTACAGCTTACTAAGGGAACATGGCTATC
TTGTGTATAGTTTCACCCTTGTGTGATTTCTTTACCTTAAATCTGGGAAGAGAACCATTG
TAGAAAATAAAAAAAATTCTCTCTGAGACATGGGAATAAGAATCTATCATGAAATTTTAA
GAGTTTTAGTGATATTGACTAAGGTTCCTAATTAAGTTGTTAGGTGTAATTTTGGGAATG
TGTTTCAGAAATAATATTTGTTCCTAATTCTGCTGATTCAGCATCAGCCTAAAATCCAAT
AAACTTGTTTTG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-915, gnl|bosTau2|chr1 (71410227-71409294)
               

               
               1-915, gnl|Hg17|chr3 (157145158-157147865)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-915, gnl|bosTau2|chr1 (71410227-71409294)
               

               
               1-915, gnl|Hg17|chr3 (157145158-157147865)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               ctl (0.153069)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               mgp (0.230681)
               

               
               ctl (0.153069)
               

               
               sug (0.127291)

	1-915, gnl\|bosTau2\|chr1 (71410227-71409294)
	1-915, gnl\|Hg17\|chr3 (157145158-157147865)