Non-Coding RNA Search

Ss1.1-Pig4-TMW8068O16.3

Sequence:


               
               ACCCAAATGTTTGGAGCATCCTTTCTTGGTCAGACGGCAGGGTTTACACCAGGTACCATA
GGGGGTTGAGCGCATGGCATTCAGTCTGGGTGATTCGCTTCAGCCTCTTACCAAGGAGCT
GTCCGGCCAGCTTCCTAGTCTAGCAGGGTCTCCTGGCTCCATTTAGCCCTGGTTGTTATT
AACTGGCAAAGTTCTTGCTACCTTCTATCACCTCTCCAAATCTCTGGAAATCCCGCCAAC
GAAAGCCTTCCGTCCTAGCATTGGCCTCGCACCCAGTCCGGCTTGGCCCTCTCTGCCATC
CTTGGTCCTTCAGAGACCACACTGCCTGTCACGTAGAAAACCACCACCTCGGGCCTGCCA
GCCATCCACACAGCGAACTGGGCCAGCTCTCTGCTGCTCTAGTCTCCCAGGTCCAGACCA
AATACAGTGAAAACTCAGCCTCTCGCCCCAGGAGCCAAAGCAACGCAACGTGAAACAATT
GGTCAAACATCGTTGGGTCCGATTCTGAGAGTAGGTGATTTCCAGACATGTCTTTCAGGT
GCCCCTCAACTACCTCAGGTTTGAAGGCCCTAAATTAAGCTGATAACTACTCATAGGGAC
AAACCGAGGGGGTTCAGATAAATCTTGGTGATGACACAGGTGTCTCAAACTTACAACAAA
CTTCCACTTTTAGGTTTGCAGGGATGGGATCGGGTTTGTTTTTCTTCTGTTTTTAACCTT
TTCCCCCAATTTGCCATTAGAATAGTTCCTATAAATGGGTTTCATTTTTCACTGAGTGCC
TACCTTCCCAGGGCAGGTAGCCACTGGCTTTGTTTCCTTCCAACAGTACTTTTATTATGG
TATTAAGACTTTCCTTTGTATAATACATTGCATCTGTGTTTTCAATTTTTCAATAAATAT
TTCAACCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCAAATGTTTGGAGCATCCTTTCTTGGTCAGACGGCAGGGTTTACACCAGGTACCATA
GGGGGTTGAGCGCATGGCATTCAGTCTGGGTGATTCGCTTCAGCCTCTTACCAAGGAGCT
GTCCGGCCAGCTTCCTAGTCTAGCAGGGTCTCCTGGCTCCATTTAGCCCTGGTTGTTATT
AACTGGCAAAGTTCTTGCTACCTTCTATCACCTCTCCAAATCTCTGGAAATCCCGCCAAC
GAAAGCCTTCCGTCCTAGCATTGGCCTCGCACCCAGTCCGGCTTGGCCCTCTCTGCCATC
CTTGGTCCTTCAGAGACCACACTGCCTGTCACGTAGAAAACCACCACCTCGGGCCTGCCA
GCCATCCACACAGCGAACTGGGCCAGCTCTCTGCTGCTCTAGTCTCCCAGGTCCAGACCA
AATACAGTGAAAACTCAGCCTCTCGCCCCAGGAGCCAAAGCAACGCAACGTGAAACAATT
GGTCAAACATCGTTGGGTCCGATTCTGAGAGTAGGTGATTTCCAGACATGTCTTTCAGGT
GCCCCTCAACTACCTCAGGTTTGAAGGCCCTAAATTAAGCTGATAACTACTCATAGGGAC
AAACCGAGGGGGTTCAGATAAATCTTGGTGATGACACAGGTGTCTCAAACTTACAACAAA
CTTCCACTTTTAGGTTTGCAGGGATGGGATCGGGTTTGTTTTTCTTCTGTTTTTAACCTT
TTCCCCCAATTTGCCATTAGAATAGTTCCTATAAATGGGTTTCATTTTTCACTGAGTGCC
TACCTTCCCAGGGCAGGTAGCCACTGGCTTTGTTTCCTTCCAACAGTACTTTTATTATGG
TATTAAGACTTTCCTTTGTATAATACATTGCATCTGTGTTTTCAATTTTTCAATAAATAT
TTCAACCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               205-423, - strand, RNAz p=0.991075
               

               
               496-614, + strand, RNAz p=0.534031

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-423, - strand, RNAz p=0.991075
               

               
               496-614, + strand, RNAz p=0.534031

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               234-372, - strand, RNAmicro p=0.996661

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               234-372, - strand, RNAmicro p=0.996661

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               126-913, gnl|bosTau2|chr25 (28017496-28018297)
               

               
               126-913, gnl|Hg17|chr7 (74808058-74807270)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-913, gnl|bosTau2|chr25 (28017496-28018297)
               

               
               126-913, gnl|Hg17|chr7 (74808058-74807270)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.526039)
               

               
               elu (0.385356)
               

               
               tbr (0.154178)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               elu (0.385356)
               

               
               tbr (0.154178)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	205-423, - strand, RNAz p=0.991075
	496-614, + strand, RNAz p=0.534031

	126-913, gnl\|bosTau2\|chr25 (28017496-28018297)
	126-913, gnl\|Hg17\|chr7 (74808058-74807270)

	fbs (0.526039)
	elu (0.385356)
	tbr (0.154178)
	cly (0.120642)
	pgl (0.118483)
	spc (0.113366)