Non-Coding RNA Search

Ss1.1-Pla1-C0000023_L18.5

Sequence:


               
               CCTGGAACCCTTTCAAATTACAGTACCAGCTGAGAAATGTAAGAGAGCGAATTGCAAAGA
ACCTAGTAGAGAAGGGTATTCTAACCACTGAGAAACAGAATTTCCTCCTATTTGACATGA
CTACTCACCCAGTGACCAATACAACAGAGAAACAACGACTAGTGAAAAAACTTCAAGATA
GTGTCTTAGAGCGGTGGGTAAATGACCCTCAGCGTATGGACAAGCGAACACTAGCACTCC
TGGTGCTAGCCCACTCCTCCGACGTGCTAGAGAATGTCTTCTCTTCTTTGACAGATGACA
AGTATGACGTGGCAATGAATCGAGCCAAGGACCTAGTAGAACTGGATCCTGAGGTAGAGG
GGACAAAGCACAGTGCCACAGAGATGATCTGGGCTGTGCTGGCAGCCTTCAATAAATCCT
AAAGCCAGCAGGTATTTTTCCTTTTCCCTTGCTGGCCAGTGACTGTGAGAGACACCATCA
CTGAATTTTGTGTGATGAGATGTTTTTCATCATTCTTTTTTCCTTCTGTTGAATCAGACT
CGTGATTTGGGGACAGCAACTTCAGGGCTTCTCCATAGACCTTGACTTATCAACAGAATT
TATTTCACCTTATTATACTTCCACTCCAGAGGTGAATAAACTGGGTTAGAACCCACACAC
CCCTAGGAAACATTTTCTCTCACTTCTAGGTTTACTTCTATCCCGTGTTCCTTAGAATTA
GCAGGACTATCTAAGTGAGATTGGGAGTTCTCTAGCCACAGAATGCAAATGAGATGTAGA
GTAAACCATTTATCACATTTTTAAAGCCTGTTTTCTATCTTAAATACGTATTTTCAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAACCCTTTCAAATTACAGTACCAGCTGAGAAATGTAAGAGAGCGAATTGCAAAGA
ACCTAGTAGAGAAGGGTATTCTAACCACTGAGAAACAGAATTTCCTCCTATTTGACATGA
CTACTCACCCAGTGACCAATACAACAGAGAAACAACGACTAGTGAAAAAACTTCAAGATA
GTGTCTTAGAGCGGTGGGTAAATGACCCTCAGCGTATGGACAAGCGAACACTAGCACTCC
TGGTGCTAGCCCACTCCTCCGACGTGCTAGAGAATGTCTTCTCTTCTTTGACAGATGACA
AGTATGACGTGGCAATGAATCGAGCCAAGGACCTAGTAGAACTGGATCCTGAGGTAGAGG
GGACAAAGCACAGTGCCACAGAGATGATCTGGGCTGTGCTGGCAGCCTTCAATAAATCCT
AAAGCCAGCAGGTATTTTTCCTTTTCCCTTGCTGGCCAGTGACTGTGAGAGACACCATCA
CTGAATTTTGTGTGATGAGATGTTTTTCATCATTCTTTTTTCCTTCTGTTGAATCAGACT
CGTGATTTGGGGACAGCAACTTCAGGGCTTCTCCATAGACCTTGACTTATCAACAGAATT
TATTTCACCTTATTATACTTCCACTCCAGAGGTGAATAAACTGGGTTAGAACCCACACAC
CCCTAGGAAACATTTTCTCTCACTTCTAGGTTTACTTCTATCCCGTGTTCCTTAGAATTA
GCAGGACTATCTAAGTGAGATTGGGAGTTCTCTAGCCACAGAATGCAAATGAGATGTAGA
GTAAACCATTTATCACATTTTTAAAGCCTGTTTTCTATCTTAAATACGTATTTTCAGGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61884813|ref|XP_608512.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61884813|ref|XP_608512.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               360-591, - strand, RNAz p=0.57452

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-591, - strand, RNAz p=0.57452

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-840, gnl|bosTau2|chr3 (16899670-16900504)
               

               
               1-840, gnl|Hg17|chr1 (147434291-147433449)
               

               
               1-840, gnl|Mm7|chr3 (95490999-95491814)
               


               
               3-411, gnl|bosTau2|chr20 (27317240-27316832)
               

               
               3-411, gnl|Hg17|chr5 (32162491-32162083)
               

               
               3-411, gnl|Mm7|chr15 (12409338-12409746)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr3 (16899670-16900504)
               

               
               1-840, gnl|Hg17|chr1 (147434291-147433449)
               

               
               1-840, gnl|Mm7|chr3 (95490999-95491814)
               


               
               3-411, gnl|bosTau2|chr20 (27317240-27316832)
               

               
               3-411, gnl|Hg17|chr5 (32162491-32162083)
               

               
               3-411, gnl|Mm7|chr15 (12409338-12409746)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               tes (0.207814)
               

               
               ste (0.135208)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ste (0.135208)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-840, gnl\|bosTau2\|chr3 (16899670-16900504)
	1-840, gnl\|Hg17\|chr1 (147434291-147433449)
	1-840, gnl\|Mm7\|chr3 (95490999-95491814)

	3-411, gnl\|bosTau2\|chr20 (27317240-27316832)
	3-411, gnl\|Hg17\|chr5 (32162491-32162083)
	3-411, gnl\|Mm7\|chr15 (12409338-12409746)

	tes (0.207814)
	ste (0.135208)
	med (0.116252)
	jca (0.11396)
	ldo (0.0970026)