Ss1.1-Pla1-C0000024_C23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAAAGAAGAATTCGTTTTTTATCAAATAATCAATGTGAAAATATCCGACGTCTTCCAT CATTCAGGAGGTATGTGGAAAAGCAAGCTTTAGAAAAGCAAGTTGCGCTCTTGACCAATG AGATATTTTTGAAGGAGGAAGCACAATCCTTACTAGAAAACCTGCATGTTTACCATACAA ATTACTTCCTGGTTTTAAGAGGTCTTCATCAGTTCACCTCTTCTCTTCCCAAGTACCCAC TGGGTCGACAGATCAGAGAACTCTACTGCACATGTTTGGAAAAGAACATATGGGATTCAG AGGAGTATGCATCAGCCTTGCAGCTGCTGAGGATGTTGGCAAAGGATGAACTGGTGACCA TACTTCAGAAATGTTTCAAAGTTTTTAAGTCTTCTTCTGAAAAGCAGCTTGGCAACGCAG CAAAGAAAATAGAGGAGTTCCTGGCCCAGTTTCAGAGCCTTGATGAAGCCAAAGAGGAAG AAGATACTTCCGGGTCACAGTCAAAGGGGCTTCAGAAGACAGACCTCTATCATCTTCAGA AGTCCTTACTGGAAATGAAGGAGTTAAGAAGAACAAGTAAGAAGCAGACCAAATTTGAAG TCCTCAGAGAACAAATTGTGAGCTTCATTGACAGTCTGGTGAGAGAACACCTCCTACCTC CAGAGACACAGCCTCTGCACGAGGTGATGTACTTCAGTGCTGCCCAGGCCCTCCGACAGC ACCTGAACGCCGCTCCACGTATCGCTCTCCACACCGCGCTCAACAACCCGTATTACTACC TCAAGAATGAAGCACTGAGAAGTGAAGAAGGTTGCATTCCAAATGTCGCCCCAGACATCT GCATCGCATATAAGCTGCACCTGGAGTGTAGCAGGCTCATCAACCTTGTGGACTGGTCAG AGGCTTTTGCAACAGTTGTGACAGCTGCTGAAAAAATGGATGCAAGTTCTGTAACCTCAG AAGAAAGGAATGAAATTATCCATGCACGGTTTATTAGAGCCGTTTCTGAACTAGAACTTT TAGGATTTATCAACCCACCAACAGAGACTGACATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAAAGAAGAATTCGTTTTTTATCAAATAATCAATGTGAAAATATCCGACGTCTTCCAT CATTCAGGAGGTATGTGGAAAAGCAAGCTTTAGAAAAGCAAGTTGCGCTCTTGACCAATG AGATATTTTTGAAGGAGGAAGCACAATCCTTACTAGAAAACCTGCATGTTTACCATACAA ATTACTTCCTGGTTTTAAGAGGTCTTCATCAGTTCACCTCTTCTCTTCCCAAGTACCCAC TGGGTCGACAGATCAGAGAACTCTACTGCACATGTTTGGAAAAGAACATATGGGATTCAG AGGAGTATGCATCAGCCTTGCAGCTGCTGAGGATGTTGGCAAAGGATGAACTGGTGACCA TACTTCAGAAATGTTTCAAAGTTTTTAAGTCTTCTTCTGAAAAGCAGCTTGGCAACGCAG CAAAGAAAATAGAGGAGTTCCTGGCCCAGTTTCAGAGCCTTGATGAAGCCAAAGAGGAAG AAGATACTTCCGGGTCACAGTCAAAGGGGCTTCAGAAGACAGACCTCTATCATCTTCAGA AGTCCTTACTGGAAATGAAGGAGTTAAGAAGAACAAGTAAGAAGCAGACCAAATTTGAAG TCCTCAGAGAACAAATTGTGAGCTTCATTGACAGTCTGGTGAGAGAACACCTCCTACCTC CAGAGACACAGCCTCTGCACGAGGTGATGTACTTCAGTGCTGCCCAGGCCCTCCGACAGC ACCTGAACGCCGCTCCACGTATCGCTCTCCACACCGCGCTCAACAACCCGTATTACTACC TCAAGAATGAAGCACTGAGAAGTGAAGAAGGTTGCATTCCAAATGTCGCCCCAGACATCT GCATCGCATATAAGCTGCACCTGGAGTGTAGCAGGCTCATCAACCTTGTGGACTGGTCAG AGGCTTTTGCAACAGTTGTGACAGCTGCTGAAAAAATGGATGCAAGTTCTGTAACCTCAG AAGAAAGGAATGAAATTATCCATGCACGGTTTATTAGAGCCGTTTCTGAACTAGAACTTT TAGGATTTATCAACCCACCAACAGAGACTGACATGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 212-445, gnl|bosTau2|chr27 (21247671-21247455) | |
| 212-445, gnl|Hg17|chr8 (38180828-38180646) | |
| 541-643, gnl|bosTau2|chr9 (34539453-34539351) | |
| 541-643, gnl|canFam2|chr12 (50100772-50100870) | |
| 541-643, gnl|canFam2|chr12 (50100766-50100882) | |
| 541-643, gnl|danRer3|chrNA (134518753-134518852) | |
| 541-643, gnl|dasNov1|scaffold_89803 (4968-4870) | |
| 541-643, gnl|dasNov1|scaffold_89803 (4974-4857) | |
| 541-643, gnl|echTel1|scaffold_211133 (10505-10389) | |
| 541-643, gnl|echTel1|scaffold_310465 (137143-137279) | |
| 541-643, gnl|fr1|chrUn (96963266-96963171) | |
| 541-643, gnl|hg17|chr11 (79377789-79377883) | |
| 541-643, gnl|hg17|chr6 (88424353-88424470) | |
| 541-643, gnl|Hg17|chr6 (88424356-88424455) | |
| 541-643, gnl|loxAfr1|scaffold_5065 (14294-14178) | |
| 541-643, gnl|loxAfr1|scaffold_54613 (8553-8461) | |
| 541-643, gnl|mm7|chr4 (34715129-34715034) | |
| 541-643, gnl|mm7|chr4 (34715152-34715022) | |
| 541-643, gnl|Mm7|chr4 (34715130-34715031) | |
| 541-643, gnl|monDom2|scaffold_0 (141491425-141491306) | |
| 541-643, gnl|oryCun1|scaffold_182355 (17583-17485) | |
| 541-643, gnl|oryCun1|scaffold_182355 (17589-17479) | |
| 541-643, gnl|panTro1|chr5 (90126845-90126962) | |
| 541-643, gnl|panTro1|chr9 (80725805-80725899) | |
| 541-643, gnl|rheMac2|chr14 (78221171-78221265) | |
| 541-643, gnl|rheMac2|chr4 (83576450-83576567) | |
| 541-643, gnl|rn3|chr5 (51179323-51179225) | |
| 541-643, gnl|rn3|chr5 (51179346-51179213) | |
| 541-643, gnl|tetNig1|chr10 (6575792-6575912) | |
| 784-903, gnl|bosTau2|chr9 (34533791-34533672) | |
| 784-903, gnl|canFam2|chr12 (50107284-50107168) | |
| 784-903, gnl|canFam2|chr12 (50107169-50107283) | |
| 784-903, gnl|danRer3|chrNA (134523347-134523447) | |
| 784-903, gnl|echTel1|scaffold_211133 (5101-5230) | |
| 784-903, gnl|echTel1|scaffold_310465 (137398-137513) | |
| 784-903, gnl|fr1|chrUn (96962861-96962753) | |
| 784-903, gnl|hg17|chr11 (79378025-79378142) | |
| 784-903, gnl|Hg17|chr6 (88431178-88431297) | |
| 784-903, gnl|hg17|chr8 (38178612-38178740) | |
| 784-903, gnl|loxAfr1|scaffold_54613 (8237-8349) | |
| 784-903, gnl|loxAfr1|scaffold_54613 (8335-8235) | |
| 784-903, gnl|mm7|chr4 (34711146-34711265) | |
| 784-903, gnl|mm7|chr4 (34711252-34711144) | |
| 784-903, gnl|Mm7|chr4 (34711253-34711143) | |
| 784-903, gnl|panTro1|chr7 (39559641-39559770) | |
| 784-903, gnl|panTro1|chr9 (80726041-80726158) | |
| 784-903, gnl|rheMac2|chr14 (78221410-78221527) | |
| 784-903, gnl|rheMac2|chr4 (83582960-83582831) | |
| 784-903, gnl|rn3|chr5 (51173659-51173774) | |
| 784-903, gnl|rn3|chr5 (51173774-51173659) | |
| 784-903, gnl|tetNig1|chr10 (6576211-6576319) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-445, gnl|bosTau2|chr27 (21247671-21247455) | |
| 212-445, gnl|Hg17|chr8 (38180828-38180646) | |
| 541-643, gnl|bosTau2|chr9 (34539453-34539351) | |
| 541-643, gnl|canFam2|chr12 (50100772-50100870) | |
| 541-643, gnl|canFam2|chr12 (50100766-50100882) | |
| 541-643, gnl|danRer3|chrNA (134518753-134518852) | |
| 541-643, gnl|dasNov1|scaffold_89803 (4968-4870) | |
| 541-643, gnl|dasNov1|scaffold_89803 (4974-4857) | |
| 541-643, gnl|echTel1|scaffold_211133 (10505-10389) | |
| 541-643, gnl|echTel1|scaffold_310465 (137143-137279) | |
| 541-643, gnl|fr1|chrUn (96963266-96963171) | |
| 541-643, gnl|hg17|chr11 (79377789-79377883) | |
| 541-643, gnl|hg17|chr6 (88424353-88424470) | |
| 541-643, gnl|Hg17|chr6 (88424356-88424455) | |
| 541-643, gnl|loxAfr1|scaffold_5065 (14294-14178) | |
| 541-643, gnl|loxAfr1|scaffold_54613 (8553-8461) | |
| 541-643, gnl|mm7|chr4 (34715129-34715034) | |
| 541-643, gnl|mm7|chr4 (34715152-34715022) | |
| 541-643, gnl|Mm7|chr4 (34715130-34715031) | |
| 541-643, gnl|monDom2|scaffold_0 (141491425-141491306) | |
| 541-643, gnl|oryCun1|scaffold_182355 (17583-17485) | |
| 541-643, gnl|oryCun1|scaffold_182355 (17589-17479) | |
| 541-643, gnl|panTro1|chr5 (90126845-90126962) | |
| 541-643, gnl|panTro1|chr9 (80725805-80725899) | |
| 541-643, gnl|rheMac2|chr14 (78221171-78221265) | |
| 541-643, gnl|rheMac2|chr4 (83576450-83576567) | |
| 541-643, gnl|rn3|chr5 (51179323-51179225) | |
| 541-643, gnl|rn3|chr5 (51179346-51179213) | |
| 541-643, gnl|tetNig1|chr10 (6575792-6575912) | |
| 784-903, gnl|bosTau2|chr9 (34533791-34533672) | |
| 784-903, gnl|canFam2|chr12 (50107284-50107168) | |
| 784-903, gnl|canFam2|chr12 (50107169-50107283) | |
| 784-903, gnl|danRer3|chrNA (134523347-134523447) | |
| 784-903, gnl|echTel1|scaffold_211133 (5101-5230) | |
| 784-903, gnl|echTel1|scaffold_310465 (137398-137513) | |
| 784-903, gnl|fr1|chrUn (96962861-96962753) | |
| 784-903, gnl|hg17|chr11 (79378025-79378142) | |
| 784-903, gnl|Hg17|chr6 (88431178-88431297) | |
| 784-903, gnl|hg17|chr8 (38178612-38178740) | |
| 784-903, gnl|loxAfr1|scaffold_54613 (8237-8349) | |
| 784-903, gnl|loxAfr1|scaffold_54613 (8335-8235) | |
| 784-903, gnl|mm7|chr4 (34711146-34711265) | |
| 784-903, gnl|mm7|chr4 (34711252-34711144) | |
| 784-903, gnl|Mm7|chr4 (34711253-34711143) | |
| 784-903, gnl|panTro1|chr7 (39559641-39559770) | |
| 784-903, gnl|panTro1|chr9 (80726041-80726158) | |
| 784-903, gnl|rheMac2|chr14 (78221410-78221527) | |
| 784-903, gnl|rheMac2|chr4 (83582960-83582831) | |
| 784-903, gnl|rn3|chr5 (51173659-51173774) | |
| 784-903, gnl|rn3|chr5 (51173774-51173659) | |
| 784-903, gnl|tetNig1|chr10 (6576211-6576319) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| lun (0.150489) | |
| eep (0.122564) |