Ss1.1-Pla1-C0000027_I05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAAAGCCAGCTGGTCTGGCTTTATTCTACAGGAATTTTTTTACCTGTCAGAGTTTGGA CAACAAAGCCCTCAGCAGGTGCTGACGGGTACAACTTCCTGGAGAAGCAGAAAGGCACTG GTGCCAAAGAAGAGCTGAAACTGTGAAGTAACTTCTATGAAGCGATGAAGTAAAGAATGG AAGGCAAATGACTGTATGTGTATGTGAATGACGGAATGGACCTCTTCCATCCATATTTTG GAAAAGCATATTCACTCACCTCAGTTTGTCAGTGTGCATTAAGAGGGAGGTCATTATGCA GTAGAAAAAGAAGAAGAAGGCAGCTCTAACTTATGTGAGTGACATGTACTGAAGATGGCC ATTAATACAACTTGGCAGTGACCTTGGCAGCATTACAGCAGGAACGAATGCAGGAATTTG GGAACTGAGCAGTGCAAGTGCTGAAGAAGGAAATTTGTTTGGAGGAAACAGGAAAGAGAA AGAAAAGGAAGGAAAAAATACATAATTTCAGGGACGAGAGAGAGAAGAAAAACGGGGACT ATGGGGAGAAAAAAGATTCAGATTACGAGGATTATGGATGAACGTAACAGACAGGTGACA TTTACAAAGAGGAAATTTGGGTTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGTGAC TGTGAGATCGCGCTGATCATCTTCAACAGCACCAACAAGCTGTTCCAGTATGCCAGCACG GACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCACGAGAGCCGGACG AACTCAGACATCGTGGAGACGTTGAGAAAGAAGGGCCTTAATGGCTGTGACAGCCCAGAT CCTGATGCAGACGATTCAGTAGGTCACAGCCCTGAGTCTGAGGACAAGTACAGGAAAATT AACGAAGATCTTGATCTAATGATCAGCAGGCAAAGATTGTGTGCTGTTCCACCTCCCAAC TTTGAGATGCCAGTCTCCATCCCAGTGTCCAGCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAAAGCCAGCTGGTCTGGCTTTATTCTACAGGAATTTTTTTACCTGTCAGAGTTTGGA CAACAAAGCCCTCAGCAGGTGCTGACGGGTACAACTTCCTGGAGAAGCAGAAAGGCACTG GTGCCAAAGAAGAGCTGAAACTGTGAAGTAACTTCTATGAAGCGATGAAGTAAAGAATGG AAGGCAAATGACTGTATGTGTATGTGAATGACGGAATGGACCTCTTCCATCCATATTTTG GAAAAGCATATTCACTCACCTCAGTTTGTCAGTGTGCATTAAGAGGGAGGTCATTATGCA GTAGAAAAAGAAGAAGAAGGCAGCTCTAACTTATGTGAGTGACATGTACTGAAGATGGCC ATTAATACAACTTGGCAGTGACCTTGGCAGCATTACAGCAGGAACGAATGCAGGAATTTG GGAACTGAGCAGTGCAAGTGCTGAAGAAGGAAATTTGTTTGGAGGAAACAGGAAAGAGAA AGAAAAGGAAGGAAAAAATACATAATTTCAGGGACGAGAGAGAGAAGAAAAACGGGGACT ATGGGGAGAAAAAAGATTCAGATTACGAGGATTATGGATGAACGTAACAGACAGGTGACA TTTACAAAGAGGAAATTTGGGTTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGTGAC TGTGAGATCGCGCTGATCATCTTCAACAGCACCAACAAGCTGTTCCAGTATGCCAGCACG GACATGGACAAGGTGCTGCTCAAGTACACGGAGTACAACGAGCCGCACGAGAGCCGGACG AACTCAGACATCGTGGAGACGTTGAGAAAGAAGGGCCTTAATGGCTGTGACAGCCCAGAT CCTGATGCAGACGATTCAGTAGGTCACAGCCCTGAGTCTGAGGACAAGTACAGGAAAATT AACGAAGATCTTGATCTAATGATCAGCAGGCAAAGATTGTGTGCTGTTCCACCTCCCAAC TTTGAGATGCCAGTCTCCATCCCAGTGTCCAGCCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-123, + strand, RNAz p=0.983661 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-123, + strand, RNAz p=0.983661 |
| Aligned organism(s): 82 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
| 1-123, gnl|bosTau2|chr7 (56417810-56417932) | |
| 1-123, gnl|canFam2|chr3 (22663187-22663348) | |
| 1-123, gnl|canFam2|chr3 (22663348-22663187) | |
| 1-123, gnl|danRer3|chrNA (99226654-99226856) | |
| 1-123, gnl|danRer3|chrNA (99226856-99226654) | |
| 1-123, gnl|dasNov1|scaffold_291644 (718-555) | |
| 1-123, gnl|dasNov1|scaffold_291644 (555-718) | |
| 1-123, gnl|echTel1|scaffold_279554 (68961-69122) | |
| 1-123, gnl|echTel1|scaffold_279554 (69122-68961) | |
| 1-123, gnl|galGal2|chrW (807721-807558) | |
| 1-123, gnl|galGal2|chrW (807558-807721) | |
| 1-123, gnl|hg17|chr5 (88235482-88235643) | |
| 1-123, gnl|Hg17|chr5 (88235608-88235486) | |
| 1-123, gnl|hg17|chr7 (66245097-66245258) | |
| 1-123, gnl|loxAfr1|scaffold_3271 (66372-66533) | |
| 1-123, gnl|loxAfr1|scaffold_3271 (66533-66372) | |
| 1-123, gnl|mm7|chr13 (80578593-80578754) | |
| 1-123, gnl|mm7|chr13 (80578754-80578593) | |
| 1-123, gnl|Mm7|chr13 (80578626-80578748) | |
| 1-123, gnl|monDom2|scaffold_20 (11583919-11584081) | |
| 1-123, gnl|monDom2|scaffold_20 (11584081-11583919) | |
| 1-123, gnl|oryCun1|scaffold_214204 (40569-40408) | |
| 1-123, gnl|oryCun1|scaffold_214204 (40408-40569) | |
| 1-123, gnl|panTro1|chr4 (27002761-27002600) | |
| 1-123, gnl|panTro1|chr6 (68059160-68059321) | |
| 1-123, gnl|rheMac2|chr6 (85189461-85189300) | |
| 1-123, gnl|rheMac2|chr6 (85189300-85189461) | |
| 1-123, gnl|rn3|chr2 (12019081-12019241) | |
| 1-123, gnl|rn3|chr2 (12019241-12019081) | |
| 1-123, gnl|tetNig1|chr12 (2219843-2220080) | |
| 1-123, gnl|tetNig1|chr12 (2220080-2219843) | |
| 1-123, gnl|xenTro1|scaffold_362 (891555-891398) | |
| 1-123, gnl|xenTro1|scaffold_362 (891398-891555) | |
| 213-398, gnl|bosTau2|chr7 (56471343-56471528) | |
| 213-398, gnl|canFam2|chr3 (22715038-22714617) | |
| 213-398, gnl|echTel1|scaffold_279554 (131645-131229) | |
| 213-398, gnl|galGal2|chrW (770301-770761) | |
| 213-398, gnl|hg17|chr5 (88178013-88178444) | |
| 213-398, gnl|Hg17|chr5 (88178379-88178198) | |
| 213-398, gnl|loxAfr1|scaffold_7744 (3101-2593) | |
| 213-398, gnl|mm7|chr13 (80629419-80628999) | |
| 213-398, gnl|Mm7|chr13 (80629063-80629229) | |
| 213-398, gnl|monDom2|scaffold_20 (11645526-11645076) | |
| 213-398, gnl|oryCun1|scaffold_214139 (194928-195352) | |
| 213-398, gnl|panTro1|chr4 (27060303-27059879) | |
| 213-398, gnl|rheMac2|chr6 (85132514-85132945) | |
| 213-398, gnl|rn3|chr2 (12070307-12069896) | |
| 593-798, gnl|bosTau2|chr21 (4639652-4639857) | |
| 593-798, gnl|canFam2|chr3 (43937089-43937282) | |
| 593-798, gnl|canFam2|chr3 (43937318-43937076) | |
| 593-798, gnl|danRer3|chr18 (28030091-28030289) | |
| 593-798, gnl|danRer3|chr18 (28030315-28030080) | |
| 593-798, gnl|dasNov1|scaffold_47448 (9811-10006) | |
| 593-798, gnl|dasNov1|scaffold_47448 (10037-9798) | |
| 593-798, gnl|echTel1|scaffold_310139 (136234-136430) | |
| 593-798, gnl|echTel1|scaffold_310139 (136463-136221) | |
| 593-798, gnl|fr1|chrUn (31261918-31261720) | |
| 593-798, gnl|fr1|chrUn (31261708-31261929) | |
| 593-798, gnl|galGal2|chr10 (17904271-17904469) | |
| 593-798, gnl|galGal2|chr10 (17904496-17904260) | |
| 593-798, gnl|hg17|chr1 (176148996-176149181) | |
| 593-798, gnl|hg17|chr15 (98003261-98003497) | |
| 593-798, gnl|Hg17|chr15 (98003287-98003492) | |
| 593-798, gnl|loxAfr1|scaffold_7744 (39822-39629) | |
| 593-798, gnl|loxAfr1|scaffold_7744 (39597-39835) | |
| 593-798, gnl|mm7|chr3 (88270320-88270122) | |
| 593-798, gnl|mm7|chr7 (63157023-63156788) | |
| 593-798, gnl|Mm7|chr7 (63156996-63156791) | |
| 593-798, gnl|monDom2|scaffold_12 (61128168-61128366) | |
| 593-798, gnl|monDom2|scaffold_12 (61128402-61128157) | |
| 593-798, gnl|oryCun1|scaffold_199193 (3495-3693) | |
| 593-798, gnl|oryCun1|scaffold_199193 (3728-3484) | |
| 593-798, gnl|panTro1|chr1 (158543769-158543952) | |
| 593-798, gnl|panTro1|chr16 (99073910-99074147) | |
| 593-798, gnl|rheMac2|chr1 (191278783-191278598) | |
| 593-798, gnl|rheMac2|chr7 (79678810-79679046) | |
| 593-798, gnl|rn3|chr2 (12124371-12124176) | |
| 593-798, gnl|rn3|chr2 (12124149-12124382) | |
| 593-798, gnl|tetNig1|chr13 (2967588-2967786) | |
| 593-798, gnl|tetNig1|chr13 (2967788-2967577) | |
| 593-798, gnl|xenTro1|scaffold_208 (1539795-1539993) | |
| 593-798, gnl|xenTro1|scaffold_208 (1540005-1539784) |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-123, gnl|bosTau2|chr7 (56417810-56417932) | |
| 1-123, gnl|canFam2|chr3 (22663187-22663348) | |
| 1-123, gnl|canFam2|chr3 (22663348-22663187) | |
| 1-123, gnl|danRer3|chrNA (99226654-99226856) | |
| 1-123, gnl|danRer3|chrNA (99226856-99226654) | |
| 1-123, gnl|dasNov1|scaffold_291644 (718-555) | |
| 1-123, gnl|dasNov1|scaffold_291644 (555-718) | |
| 1-123, gnl|echTel1|scaffold_279554 (68961-69122) | |
| 1-123, gnl|echTel1|scaffold_279554 (69122-68961) | |
| 1-123, gnl|galGal2|chrW (807721-807558) | |
| 1-123, gnl|galGal2|chrW (807558-807721) | |
| 1-123, gnl|hg17|chr5 (88235482-88235643) | |
| 1-123, gnl|Hg17|chr5 (88235608-88235486) | |
| 1-123, gnl|hg17|chr7 (66245097-66245258) | |
| 1-123, gnl|loxAfr1|scaffold_3271 (66372-66533) | |
| 1-123, gnl|loxAfr1|scaffold_3271 (66533-66372) | |
| 1-123, gnl|mm7|chr13 (80578593-80578754) | |
| 1-123, gnl|mm7|chr13 (80578754-80578593) | |
| 1-123, gnl|Mm7|chr13 (80578626-80578748) | |
| 1-123, gnl|monDom2|scaffold_20 (11583919-11584081) | |
| 1-123, gnl|monDom2|scaffold_20 (11584081-11583919) | |
| 1-123, gnl|oryCun1|scaffold_214204 (40569-40408) | |
| 1-123, gnl|oryCun1|scaffold_214204 (40408-40569) | |
| 1-123, gnl|panTro1|chr4 (27002761-27002600) | |
| 1-123, gnl|panTro1|chr6 (68059160-68059321) | |
| 1-123, gnl|rheMac2|chr6 (85189461-85189300) | |
| 1-123, gnl|rheMac2|chr6 (85189300-85189461) | |
| 1-123, gnl|rn3|chr2 (12019081-12019241) | |
| 1-123, gnl|rn3|chr2 (12019241-12019081) | |
| 1-123, gnl|tetNig1|chr12 (2219843-2220080) | |
| 1-123, gnl|tetNig1|chr12 (2220080-2219843) | |
| 1-123, gnl|xenTro1|scaffold_362 (891555-891398) | |
| 1-123, gnl|xenTro1|scaffold_362 (891398-891555) | |
| 213-398, gnl|bosTau2|chr7 (56471343-56471528) | |
| 213-398, gnl|canFam2|chr3 (22715038-22714617) | |
| 213-398, gnl|echTel1|scaffold_279554 (131645-131229) | |
| 213-398, gnl|galGal2|chrW (770301-770761) | |
| 213-398, gnl|hg17|chr5 (88178013-88178444) | |
| 213-398, gnl|Hg17|chr5 (88178379-88178198) | |
| 213-398, gnl|loxAfr1|scaffold_7744 (3101-2593) | |
| 213-398, gnl|mm7|chr13 (80629419-80628999) | |
| 213-398, gnl|Mm7|chr13 (80629063-80629229) | |
| 213-398, gnl|monDom2|scaffold_20 (11645526-11645076) | |
| 213-398, gnl|oryCun1|scaffold_214139 (194928-195352) | |
| 213-398, gnl|panTro1|chr4 (27060303-27059879) | |
| 213-398, gnl|rheMac2|chr6 (85132514-85132945) | |
| 213-398, gnl|rn3|chr2 (12070307-12069896) | |
| 593-798, gnl|bosTau2|chr21 (4639652-4639857) | |
| 593-798, gnl|canFam2|chr3 (43937089-43937282) | |
| 593-798, gnl|canFam2|chr3 (43937318-43937076) | |
| 593-798, gnl|danRer3|chr18 (28030091-28030289) | |
| 593-798, gnl|danRer3|chr18 (28030315-28030080) | |
| 593-798, gnl|dasNov1|scaffold_47448 (9811-10006) | |
| 593-798, gnl|dasNov1|scaffold_47448 (10037-9798) | |
| 593-798, gnl|echTel1|scaffold_310139 (136234-136430) | |
| 593-798, gnl|echTel1|scaffold_310139 (136463-136221) | |
| 593-798, gnl|fr1|chrUn (31261918-31261720) | |
| 593-798, gnl|fr1|chrUn (31261708-31261929) | |
| 593-798, gnl|galGal2|chr10 (17904271-17904469) | |
| 593-798, gnl|galGal2|chr10 (17904496-17904260) | |
| 593-798, gnl|hg17|chr1 (176148996-176149181) | |
| 593-798, gnl|hg17|chr15 (98003261-98003497) | |
| 593-798, gnl|Hg17|chr15 (98003287-98003492) | |
| 593-798, gnl|loxAfr1|scaffold_7744 (39822-39629) | |
| 593-798, gnl|loxAfr1|scaffold_7744 (39597-39835) | |
| 593-798, gnl|mm7|chr3 (88270320-88270122) | |
| 593-798, gnl|mm7|chr7 (63157023-63156788) | |
| 593-798, gnl|Mm7|chr7 (63156996-63156791) | |
| 593-798, gnl|monDom2|scaffold_12 (61128168-61128366) | |
| 593-798, gnl|monDom2|scaffold_12 (61128402-61128157) | |
| 593-798, gnl|oryCun1|scaffold_199193 (3495-3693) | |
| 593-798, gnl|oryCun1|scaffold_199193 (3728-3484) | |
| 593-798, gnl|panTro1|chr1 (158543769-158543952) | |
| 593-798, gnl|panTro1|chr16 (99073910-99074147) | |
| 593-798, gnl|rheMac2|chr1 (191278783-191278598) | |
| 593-798, gnl|rheMac2|chr7 (79678810-79679046) | |
| 593-798, gnl|rn3|chr2 (12124371-12124176) | |
| 593-798, gnl|rn3|chr2 (12124149-12124382) | |
| 593-798, gnl|tetNig1|chr13 (2967588-2967786) | |
| 593-798, gnl|tetNig1|chr13 (2967788-2967577) | |
| 593-798, gnl|xenTro1|scaffold_208 (1539795-1539993) | |
| 593-798, gnl|xenTro1|scaffold_208 (1540005-1539784) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |