Non-Coding RNA Search

Ss1.1-Pla1-C0000027_M05.5

Sequence:


               
               TCTTTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTG
GTGGCCCTCTCAGAGTGCTTAGTCATAATCCCTCTCACGAAGGTCAAGTCCATCCGAGAA
AACCTCAGGGAAAAAGACTTGCTGCTAAATTTCCTGAAGGAACATCCCTACAACATGATC
CAGAAATTCGGGCTAAAGGGTTCTCTCTGTTCCCCAAAAATCTCTTGTCTTCGCCTGTGG
AACTACCTGGATATGGTCTACGTGGGCAACATCACCATTGGCACACCCCCGCAGCTGTTC
AGTGTCATATTTGACACCGCCTCATCTGACTTGTGGGTGCCCTCCAACCAATGCCACAGC
AGAGCCTGTGTTACGCACAGGTCATTCAATCCAACTCTTTCCAGTACCTTCCAGAGTTCA
AATCGGACCGTCAAACTGGCCCCTCATTCTGGGCTAGTGTCTGGATTACTGGGATATGAC
ACCGTTCAGATTGGCAGATTCAAGAGCGAGAACCAGGCATTTGGCTTGAGCCAGTCAGAG
CCTGTAAAGGAACTTGAAAATGCATTCTTTGATGGCGTCCTGGGCCTGGGCTATCCCAGC
CTCGCCATCCAAGGGACCACCCCCGTCTTTGACAACTTAAGGAAGCAAGGGCAAATTCCG
GAGCCTGTCTTTGCCCTCTACTTGAGCACCAATACAAAGAAGGGCAGCGTGCTGATGATT
GGCGGCGTGGACAACAACTTCTTCACAGGAAACCTCAAGTGGGTGCCCCTGTCAGCGCGA
AACTACTGGCAGATCACCTTGGACAGGATCACCTGGAGAGGGGTGGTTGTTGGTTGTACC
CGTGGCTGCCAGGCCATCGTGGATAGTGGGAGCGCATTCCTGCTTGGCCCAAGTAGACAG
ATCTCCAGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTCCTGAGTACCTGGACCCAGGAAAGAAGCATGAAGTGGCTTGTGATCCTTGGGCTG
GTGGCCCTCTCAGAGTGCTTAGTCATAATCCCTCTCACGAAGGTCAAGTCCATCCGAGAA
AACCTCAGGGAAAAAGACTTGCTGCTAAATTTCCTGAAGGAACATCCCTACAACATGATC
CAGAAATTCGGGCTAAAGGGTTCTCTCTGTTCCCCAAAAATCTCTTGTCTTCGCCTGTGG
AACTACCTGGATATGGTCTACGTGGGCAACATCACCATTGGCACACCCCCGCAGCTGTTC
AGTGTCATATTTGACACCGCCTCATCTGACTTGTGGGTGCCCTCCAACCAATGCCACAGC
AGAGCCTGTGTTACGCACAGGTCATTCAATCCAACTCTTTCCAGTACCTTCCAGAGTTCA
AATCGGACCGTCAAACTGGCCCCTCATTCTGGGCTAGTGTCTGGATTACTGGGATATGAC
ACCGTTCAGATTGGCAGATTCAAGAGCGAGAACCAGGCATTTGGCTTGAGCCAGTCAGAG
CCTGTAAAGGAACTTGAAAATGCATTCTTTGATGGCGTCCTGGGCCTGGGCTATCCCAGC
CTCGCCATCCAAGGGACCACCCCCGTCTTTGACAACTTAAGGAAGCAAGGGCAAATTCCG
GAGCCTGTCTTTGCCCTCTACTTGAGCACCAATACAAAGAAGGGCAGCGTGCTGATGATT
GGCGGCGTGGACAACAACTTCTTCACAGGAAACCTCAAGTGGGTGCCCCTGTCAGCGCGA
AACTACTGGCAGATCACCTTGGACAGGATCACCTGGAGAGGGGTGGTTGTTGGTTGTACC
CGTGGCTGCCAGGCCATCGTGGATAGTGGGAGCGCATTCCTGCTTGGCCCAAGTAGACAG
ATCTCCAGCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2499825|sp|Q29078|PAG1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2499825|sp|Q29078|PAG1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               507-625, - strand, RNAz p=0.77819

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               507-625, - strand, RNAz p=0.77819

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               243-380, gnl|bosTau2|chr29 (27936005-27935868)
               

               
               243-380, gnl|Hg17|chr11 (60730548-60730685)
               

               
               243-380, gnl|Mm7|chr19 (10355293-10355162)
               


               
               507-687, gnl|bosTau2|chr29 (30738114-30738294)
               

               
               507-687, gnl|Hg17|chr11 (60732356-60732536)
               

               
               507-687, gnl|Mm7|chr19 (10353945-10353765)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               243-380, gnl|bosTau2|chr29 (27936005-27935868)
               

               
               243-380, gnl|Hg17|chr11 (60730548-60730685)
               

               
               243-380, gnl|Mm7|chr19 (10355293-10355162)
               


               
               507-687, gnl|bosTau2|chr29 (30738114-30738294)
               

               
               507-687, gnl|Hg17|chr11 (60732356-60732536)
               

               
               507-687, gnl|Mm7|chr19 (10353945-10353765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ute (0.132784)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)

	243-380, gnl\|bosTau2\|chr29 (27936005-27935868)
	243-380, gnl\|Hg17\|chr11 (60730548-60730685)
	243-380, gnl\|Mm7\|chr19 (10355293-10355162)

	507-687, gnl\|bosTau2\|chr29 (30738114-30738294)
	507-687, gnl\|Hg17\|chr11 (60732356-60732536)
	507-687, gnl\|Mm7\|chr19 (10353945-10353765)