Ss1.1-Pla1-C0000029_K16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGAAGCGGCCGGTGCACCCACCCGAGCCCGCGGGCAGCAGGGCGGCAGCGGCCACGG CCGGGCGCCCCGAAGGGTGGGGCCCCGGGTCGCTCGAGAGCGGCTGAACCCCCGCGGCGC CGCCGGCGGCCCCATGCGTCGGGGGACCATGCCTCAGCCCGGAGCGTGGCCGGGCGCGAG CTGTGCCGAGAAGCCGGCGTGGGAGGCGGGGGCCGCGGCGCCGGAGGGCGGGAAGGCGGC AGCCGGCGGGCCGCCGCGGGCCGCGATGCGGTGCGCAGCCGAGCACGAGGAGGACATGTA TCGTGCAGCGGATGAAATAGAAAAGGAGAAAGAATTACTTATACATGAAAGAGGGGCATC AGAACCCAGATTAAGTGTAGCTCCTGAAATGGATATCATGGACTACTGCAAAAAAGAATG GAGAGGAAATACACAAAAAGCAACATGTATGAAAAAGGGCTACGAGGAGGTGTCTCAGAA ATTCACCTCCATAAGACGAGTCCGTGGAGATAATTACTGCGCGCTGAGGGCCACGCTGTT CCAGGCCATGAGCCAGCCGGCGGCGCTGCCCTCCTGGCTGGAGGACCCGGAGCTCACGCT GTTACCAGAGAAACTCATGAGCAAATACAGCTGGATCAAGCAGTGGAAACTTGGACTGAA ATTTGAGGGGAAGAGCGAGGACCTGGTTGATAAAATAAAGGAGTCCCTTGCTTTGCTGAG GAAGAAGTGGGCAGGCTTGGCTGAACTGAGAACTGCCGAGGCGAGGCAGATAGCTTGTGA TGAACTGTTCACCAATGAAGAAGAAGAGTACAGCCTCTATGAAGCTGTAAAATTTCTAAT GCTGAACAGAGCCATTGAACTATATGATGATAAAGAGAAGGGAAAGGATGTCCCATTTTT CTCTGTGCTTCTGTGTGCTCGGGATACATCAAATGACCCTGGACAGCTGCTGAGGAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGAAGCGGCCGGTGCACCCACCCGAGCCCGCGGGCAGCAGGGCGGCAGCGGCCACGG CCGGGCGCCCCGAAGGGTGGGGCCCCGGGTCGCTCGAGAGCGGCTGAACCCCCGCGGCGC CGCCGGCGGCCCCATGCGTCGGGGGACCATGCCTCAGCCCGGAGCGTGGCCGGGCGCGAG CTGTGCCGAGAAGCCGGCGTGGGAGGCGGGGGCCGCGGCGCCGGAGGGCGGGAAGGCGGC AGCCGGCGGGCCGCCGCGGGCCGCGATGCGGTGCGCAGCCGAGCACGAGGAGGACATGTA TCGTGCAGCGGATGAAATAGAAAAGGAGAAAGAATTACTTATACATGAAAGAGGGGCATC AGAACCCAGATTAAGTGTAGCTCCTGAAATGGATATCATGGACTACTGCAAAAAAGAATG GAGAGGAAATACACAAAAAGCAACATGTATGAAAAAGGGCTACGAGGAGGTGTCTCAGAA ATTCACCTCCATAAGACGAGTCCGTGGAGATAATTACTGCGCGCTGAGGGCCACGCTGTT CCAGGCCATGAGCCAGCCGGCGGCGCTGCCCTCCTGGCTGGAGGACCCGGAGCTCACGCT GTTACCAGAGAAACTCATGAGCAAATACAGCTGGATCAAGCAGTGGAAACTTGGACTGAA ATTTGAGGGGAAGAGCGAGGACCTGGTTGATAAAATAAAGGAGTCCCTTGCTTTGCTGAG GAAGAAGTGGGCAGGCTTGGCTGAACTGAGAACTGCCGAGGCGAGGCAGATAGCTTGTGA TGAACTGTTCACCAATGAAGAAGAAGAGTACAGCCTCTATGAAGCTGTAAAATTTCTAAT GCTGAACAGAGCCATTGAACTATATGATGATAAAGAGAAGGGAAAGGATGTCCCATTTTT CTCTGTGCTTCTGTGTGCTCGGGATACATCAAATGACCCTGGACAGCTGCTGAGGAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 726-924, + strand, RNAz p=0.823502 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 726-924, + strand, RNAz p=0.823502 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK092203, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-285, gnl|bosTau2|chr5 (60441295-60440997) | |
| 1-285, gnl|Hg17|chr5 (14717803-14718086) | |
| 1-285, gnl|Mm7|chr15 (27733822-27733582) | |
| 456-605, gnl|bosTau2|chr5 (60424009-60423860) | |
| 456-605, gnl|canFam2|chr34 (3150546-3150395) | |
| 456-605, gnl|danRer3|chr24 (7216793-7216926) | |
| 456-605, gnl|dasNov1|scaffold_15434 (7922-8073) | |
| 456-605, gnl|echTel1|scaffold_172445 (2654-2500) | |
| 456-605, gnl|fr1|chrUn (3262086-3262213) | |
| 456-605, gnl|galGal2|chrUn (47219184-47219330) | |
| 456-605, gnl|hg17|chr5 (14734547-14734698) | |
| 456-605, gnl|Hg17|chr5 (14734571-14734720) | |
| 456-605, gnl|mm7|chr15 (27719620-27719468) | |
| 456-605, gnl|Mm7|chr15 (27719593-27719444) | |
| 456-605, gnl|monDom2|scaffold_4 (36654890-36655039) | |
| 456-605, gnl|oryCun1|scaffold_206051 (99892-99741) | |
| 456-605, gnl|panTro1|chr4 (15151054-15151205) | |
| 456-605, gnl|rheMac2|chr6 (14870760-14870911) | |
| 456-605, gnl|rn3|chr2 (79385477-79385325) | |
| 456-605, gnl|tetNig1|chr6 (4710981-4711130) | |
| 726-960, gnl|bosTau2|chr5 (60414771-60414537) | |
| 726-960, gnl|Hg17|chr5 (14743146-14743380) | |
| 726-960, gnl|Mm7|chr15 (27711987-27711753) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-285, gnl|bosTau2|chr5 (60441295-60440997) | |
| 1-285, gnl|Hg17|chr5 (14717803-14718086) | |
| 1-285, gnl|Mm7|chr15 (27733822-27733582) | |
| 456-605, gnl|bosTau2|chr5 (60424009-60423860) | |
| 456-605, gnl|canFam2|chr34 (3150546-3150395) | |
| 456-605, gnl|danRer3|chr24 (7216793-7216926) | |
| 456-605, gnl|dasNov1|scaffold_15434 (7922-8073) | |
| 456-605, gnl|echTel1|scaffold_172445 (2654-2500) | |
| 456-605, gnl|fr1|chrUn (3262086-3262213) | |
| 456-605, gnl|galGal2|chrUn (47219184-47219330) | |
| 456-605, gnl|hg17|chr5 (14734547-14734698) | |
| 456-605, gnl|Hg17|chr5 (14734571-14734720) | |
| 456-605, gnl|mm7|chr15 (27719620-27719468) | |
| 456-605, gnl|Mm7|chr15 (27719593-27719444) | |
| 456-605, gnl|monDom2|scaffold_4 (36654890-36655039) | |
| 456-605, gnl|oryCun1|scaffold_206051 (99892-99741) | |
| 456-605, gnl|panTro1|chr4 (15151054-15151205) | |
| 456-605, gnl|rheMac2|chr6 (14870760-14870911) | |
| 456-605, gnl|rn3|chr2 (79385477-79385325) | |
| 456-605, gnl|tetNig1|chr6 (4710981-4711130) | |
| 726-960, gnl|bosTau2|chr5 (60414771-60414537) | |
| 726-960, gnl|Hg17|chr5 (14743146-14743380) | |
| 726-960, gnl|Mm7|chr15 (27711987-27711753) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| ldo (0.0970026) |