Non-Coding RNA Search

Ss1.1-Pla1-C0000031_B24.5

Sequence:


               
               CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAGAACTCGGTGCAGGAGTTGGGGAGGGG
CCATGGTGCCAAGCCAGCTGTGGGGGAGACTGGAGAAGCCCTTTCTCTTCCTGTGCTGCG
CCTCCTTCCTCCTGGGGCTGGCTTTGCTGGGGATACGGCCGGACATCGCCCCTGTTGCTT
ATTTCTTTCTCAGCTTGAGCGGCTTCTTCTTGTTGGTCTGCTTCCTGGCCTGCCTTTTGG
AACGGGGGTCTCAATCCATGCAGACTGAGAGCCCAGGGGCCTCAAGCAATGCACGGGACA
ATGAAGCCTTTGAAGTGCCAGCCTACGAAGAGGCCACGGTGTTGGAATCACAGAGCCACC
CCCAAGAGCTGGATCAACCCCCCTCCTACAGCAGTGTTGTTGTGATCCCCCCAGCACATG
AGGAGGGACAGCCTAGCCACCCAGAGGAGCCCAGGAGAACCAGATTGGACAGGCGAGTGG
GCTCAGAAGGATCTGTGACCTCAGGAAGCCATGGAAGACCCCCAGTCAGCCTGCGGCTTC
GGGGAGCACGGGTTGTGTCCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAGAACTCGGTGCAGGAGTTGGGGAGGGG
CCATGGTGCCAAGCCAGCTGTGGGGGAGACTGGAGAAGCCCTTTCTCTTCCTGTGCTGCG
CCTCCTTCCTCCTGGGGCTGGCTTTGCTGGGGATACGGCCGGACATCGCCCCTGTTGCTT
ATTTCTTTCTCAGCTTGAGCGGCTTCTTCTTGTTGGTCTGCTTCCTGGCCTGCCTTTTGG
AACGGGGGTCTCAATCCATGCAGACTGAGAGCCCAGGGGCCTCAAGCAATGCACGGGACA
ATGAAGCCTTTGAAGTGCCAGCCTACGAAGAGGCCACGGTGTTGGAATCACAGAGCCACC
CCCAAGAGCTGGATCAACCCCCCTCCTACAGCAGTGTTGTTGTGATCCCCCCAGCACATG
AGGAGGGACAGCCTAGCCACCCAGAGGAGCCCAGGAGAACCAGATTGGACAGGCGAGTGG
GCTCAGAAGGATCTGTGACCTCAGGAAGCCATGGAAGACCCCCAGTCAGCCTGCGGCTTC
GGGGAGCACGGGTTGTGTCCACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61852158|ref|XP_593382.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61852158|ref|XP_593382.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-143, + strand, RNAz p=0.574625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-143, + strand, RNAz p=0.574625

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               42-296, gnl|bosTau2|chr4 (59203286-59203031)
               

               
               42-296, gnl|canFam2|chr16 (9378534-9378097)
               

               
               42-296, gnl|dasNov1|scaffold_6479 (141372-140929)
               

               
               42-296, gnl|hg17|chr7 (142499850-142500305)
               

               
               42-296, gnl|Hg17|chr7 (142499866-142500133)
               

               
               42-296, gnl|loxAfr1|scaffold_124299 (7920-8308)
               

               
               42-296, gnl|mm7|chr6 (42206208-42206662)
               

               
               42-296, gnl|Mm7|chr6 (42206221-42206488)
               

               
               42-296, gnl|monDom2|scaffold_7 (1876774-1877209)
               

               
               42-296, gnl|oryCun1|scaffold_62027 (1321-899)
               

               
               42-296, gnl|panTro1|chr6 (145296933-145297388)
               

               
               42-296, gnl|rn3|chr4 (70303967-70304417)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-296, gnl|bosTau2|chr4 (59203286-59203031)
               

               
               42-296, gnl|canFam2|chr16 (9378534-9378097)
               

               
               42-296, gnl|dasNov1|scaffold_6479 (141372-140929)
               

               
               42-296, gnl|hg17|chr7 (142499850-142500305)
               

               
               42-296, gnl|Hg17|chr7 (142499866-142500133)
               

               
               42-296, gnl|loxAfr1|scaffold_124299 (7920-8308)
               

               
               42-296, gnl|mm7|chr6 (42206208-42206662)
               

               
               42-296, gnl|Mm7|chr6 (42206221-42206488)
               

               
               42-296, gnl|monDom2|scaffold_7 (1876774-1877209)
               

               
               42-296, gnl|oryCun1|scaffold_62027 (1321-899)
               

               
               42-296, gnl|panTro1|chr6 (145296933-145297388)
               

               
               42-296, gnl|rn3|chr4 (70303967-70304417)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	42-296, gnl\|bosTau2\|chr4 (59203286-59203031)
	42-296, gnl\|canFam2\|chr16 (9378534-9378097)
	42-296, gnl\|dasNov1\|scaffold_6479 (141372-140929)
	42-296, gnl\|hg17\|chr7 (142499850-142500305)
	42-296, gnl\|Hg17\|chr7 (142499866-142500133)
	42-296, gnl\|loxAfr1\|scaffold_124299 (7920-8308)
	42-296, gnl\|mm7\|chr6 (42206208-42206662)
	42-296, gnl\|Mm7\|chr6 (42206221-42206488)
	42-296, gnl\|monDom2\|scaffold_7 (1876774-1877209)
	42-296, gnl\|oryCun1\|scaffold_62027 (1321-899)
	42-296, gnl\|panTro1\|chr6 (145296933-145297388)
	42-296, gnl\|rn3\|chr4 (70303967-70304417)