Non-Coding RNA Search

Ss1.1-Pla1-C0000031_C10.5

Sequence:


               
               GATGACCAAAGCAGGCATGTGTGCACAGAGTGCAACAGCCGCTGAGCATGTGAGAGTGTG
AGAGAGAGTGTGTGTGAGTATGTGTGTGCACATGCACCTGCAGAGACAGAAACACCTCTG
AATCTGACTCACATAAATCAATAGATATATACAAAGTGTTGAATGGCATATGTCGTCCTC
AGTATGACATTCTACAGCTTCTGAAAAATAAAGGCTCTCAATGTTATACGAAATCATTAA
TGAATTGGCAGTTCTTGAGAAGTGCTCTACAGAAACCGCAGTGGACGCCCTCTTAGTTGT
CTTCGTATTGATTTGTTGTTTCATGTCAGTCTTAAGAGGCAAGTGTGCAGTGCCGTAGAC
ATTAATATTTGTGTGCATGTCCTATTCAATTAATAGTTGAATATTGATAAAAGTAAGTGC
TCACACCCAGGTAATCCTCAAAATGACTTTCCCTGTCTTCCTCCAGCGTTATCTATAAAT
AACTACCAAGTCTTTGTGATGCTTAACCTCACATCTCCTATATCTTTAAAGAAACAGAAA
GATAAGGTGCAGCTTTTTCCTATGTGATCTTAAGCCTTTCTTTTATAGCTAATTAAAGTA
TTAATTAAATATTCACGTTTAACATATCTTCTAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGACCAAAGCAGGCATGTGTGCACAGAGTGCAACAGCCGCTGAGCATGTGAGAGTGTG
AGAGAGAGTGTGTGTGAGTATGTGTGTGCACATGCACCTGCAGAGACAGAAACACCTCTG
AATCTGACTCACATAAATCAATAGATATATACAAAGTGTTGAATGGCATATGTCGTCCTC
AGTATGACATTCTACAGCTTCTGAAAAATAAAGGCTCTCAATGTTATACGAAATCATTAA
TGAATTGGCAGTTCTTGAGAAGTGCTCTACAGAAACCGCAGTGGACGCCCTCTTAGTTGT
CTTCGTATTGATTTGTTGTTTCATGTCAGTCTTAAGAGGCAAGTGTGCAGTGCCGTAGAC
ATTAATATTTGTGTGCATGTCCTATTCAATTAATAGTTGAATATTGATAAAAGTAAGTGC
TCACACCCAGGTAATCCTCAAAATGACTTTCCCTGTCTTCCTCCAGCGTTATCTATAAAT
AACTACCAAGTCTTTGTGATGCTTAACCTCACATCTCCTATATCTTTAAAGAAACAGAAA
GATAAGGTGCAGCTTTTTCCTATGTGATCTTAAGCCTTTCTTTTATAGCTAATTAAAGTA
TTAATTAAATATTCACGTTTAACATATCTTCTAGGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               215-636, gnl|bosTau2|chr14 (19750979-19751404)
               

               
               215-636, gnl|Hg17|chr8 (71201151-71200732)
               

               
               215-636, gnl|Mm7|chr1 (13296511-13296104)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-636, gnl|bosTau2|chr14 (19750979-19751404)
               

               
               215-636, gnl|Hg17|chr8 (71201151-71200732)
               

               
               215-636, gnl|Mm7|chr1 (13296511-13296104)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               cbl (0.114797)

	215-636, gnl\|bosTau2\|chr14 (19750979-19751404)
	215-636, gnl\|Hg17\|chr8 (71201151-71200732)
	215-636, gnl\|Mm7\|chr1 (13296511-13296104)