Ss1.1-Pla1-C0000031_G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACTTTCACAGAAATGGATTCTCATGAGGAGAAGGTGTTCAGAGCAGTGAGAGAGACTC AAGAACGTGAAGCCAAGGCTGAGATGCGGCGTAAAGCAAAGGAGTTACAACAGGCCCGAA GAGATGCAGAAAGACAGGGCAAAAAAGCACCAGGATTTGGGGGATTTGGAAGCTCCACAG TATCTGGAAGCAGCACAGCTGCTATGATCACAGAGACCATCATTGAAACTGATAAACCAA AAGTGGCACCTGCACCAGCCAGGCCTTCAGGCCCTAGCAAAGCTTTGAAACTGGGAGCCA AAGGAAAGGAAGTAGATAACTTTGTGGACAAATTGAAATCTGAAGGTGAAACTATCATGT CCTCCAATATGGGCAAGCGTACCTCTGATGCAACCAAAGTGCATGCTCCTCCCATTAATA TGGAAAGTGTGCACATGAAGATTGAGGAAAAGATCACACTAACCTGTGGGCGAGATGGAG GATTACAGAATATGGAGTTGCACGGCATGATCATGCTTAGGATCTCAGATGATAAATTTG GCCGAATTCGACTTCATGTGGAAAATGAAGATAAGAAAGGGGTGCAACTACAGACCCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACTTTCACAGAAATGGATTCTCATGAGGAGAAGGTGTTCAGAGCAGTGAGAGAGACTC AAGAACGTGAAGCCAAGGCTGAGATGCGGCGTAAAGCAAAGGAGTTACAACAGGCCCGAA GAGATGCAGAAAGACAGGGCAAAAAAGCACCAGGATTTGGGGGATTTGGAAGCTCCACAG TATCTGGAAGCAGCACAGCTGCTATGATCACAGAGACCATCATTGAAACTGATAAACCAA AAGTGGCACCTGCACCAGCCAGGCCTTCAGGCCCTAGCAAAGCTTTGAAACTGGGAGCCA AAGGAAAGGAAGTAGATAACTTTGTGGACAAATTGAAATCTGAAGGTGAAACTATCATGT CCTCCAATATGGGCAAGCGTACCTCTGATGCAACCAAAGTGCATGCTCCTCCCATTAATA TGGAAAGTGTGCACATGAAGATTGAGGAAAAGATCACACTAACCTGTGGGCGAGATGGAG GATTACAGAATATGGAGTTGCACGGCATGATCATGCTTAGGATCTCAGATGATAAATTTG GCCGAATTCGACTTCATGTGGAAAATGAAGATAAGAAAGGGGTGCAACTACAGACCCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 465-593, + strand, RNAz p=0.871451 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 465-593, + strand, RNAz p=0.871451 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 55-263, gnl|bosTau2|chr15 (14970916-14970708) | |
| 55-263, gnl|Hg17|chr11 (117959483-117959940) | |
| 55-263, gnl|Mm7|chr9 (44693113-44692905) | |
| 426-593, gnl|bosTau2|chr15 (14963888-14963721) | |
| 426-593, gnl|canFam2|chr5 (18160077-18159875) | |
| 426-593, gnl|danRer3|chr5 (24808205-24808012) | |
| 426-593, gnl|dasNov1|scaffold_26036 (57538-57343) | |
| 426-593, gnl|echTel1|scaffold_316157 (77162-76967) | |
| 426-593, gnl|fr1|chrUn (211578900-211578718) | |
| 426-593, gnl|galGal2|chr24 (5157879-5157698) | |
| 426-593, gnl|hg17|chr11 (117966253-117966448) | |
| 426-593, gnl|Hg17|chr11 (117966264-117966431) | |
| 426-593, gnl|mm7|chr9 (44686635-44686440) | |
| 426-593, gnl|Mm7|chr9 (44686622-44686455) | |
| 426-593, gnl|monDom2|scaffold_2 (120072168-120071978) | |
| 426-593, gnl|oryCun1|scaffold_159184 (1420-1225) | |
| 426-593, gnl|panTro1|chr9 (119974892-119975087) | |
| 426-593, gnl|rheMac2|chr14 (116989744-116989939) | |
| 426-593, gnl|rn3|chr8 (47718026-47717831) | |
| 426-593, gnl|tetNig1|chr16 (8088217-8088387) | |
| 426-593, gnl|xenTro1|scaffold_75 (350624-350804) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-263, gnl|bosTau2|chr15 (14970916-14970708) | |
| 55-263, gnl|Hg17|chr11 (117959483-117959940) | |
| 55-263, gnl|Mm7|chr9 (44693113-44692905) | |
| 426-593, gnl|bosTau2|chr15 (14963888-14963721) | |
| 426-593, gnl|canFam2|chr5 (18160077-18159875) | |
| 426-593, gnl|danRer3|chr5 (24808205-24808012) | |
| 426-593, gnl|dasNov1|scaffold_26036 (57538-57343) | |
| 426-593, gnl|echTel1|scaffold_316157 (77162-76967) | |
| 426-593, gnl|fr1|chrUn (211578900-211578718) | |
| 426-593, gnl|galGal2|chr24 (5157879-5157698) | |
| 426-593, gnl|hg17|chr11 (117966253-117966448) | |
| 426-593, gnl|Hg17|chr11 (117966264-117966431) | |
| 426-593, gnl|mm7|chr9 (44686635-44686440) | |
| 426-593, gnl|Mm7|chr9 (44686622-44686455) | |
| 426-593, gnl|monDom2|scaffold_2 (120072168-120071978) | |
| 426-593, gnl|oryCun1|scaffold_159184 (1420-1225) | |
| 426-593, gnl|panTro1|chr9 (119974892-119975087) | |
| 426-593, gnl|rheMac2|chr14 (116989744-116989939) | |
| 426-593, gnl|rn3|chr8 (47718026-47717831) | |
| 426-593, gnl|tetNig1|chr16 (8088217-8088387) | |
| 426-593, gnl|xenTro1|scaffold_75 (350624-350804) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| eep (0.122564) | |
| clu (0.119646) |