Non-Coding RNA Search

Ss1.1-Pla1-C0000031_K05.5

Sequence:


               
               GCCGCAGGCGGGCGGCCCAGGCGCCTGAAGGTTACCGAGTGCATGAACGCCTAGCCTCCC
GCGCTGCCCCGCCCGCCGGCCCGCCGGCCAGCCCGCCCGCTCGTCCGTCCGCTAGCCCGC
CAGCCCCTCGGAGCCCGGCGGCGGCGGCGGCGGCGGCGACGGCCGCAGGAGGCGCCGTCT
CCCTCCCAGGTGCGCGCTTCGTTCCCGGAGCCGCGGAACTCGGCGGCCGCCATGGCGTCC
AACATGGACCGGGAGATGATCCTAGCGGATTTTCAGGCATGTACTGGCATTGAAAACATT
GATGAAGCTATTACACTGCTTGAACAAAATAACTGGGACTTAGTGGCAGCTATCAATGGT
GTGATACCCCAGGAAAATGGCATTCTACAAAGTGACTATGGAGGTGAGACCATACCAGGA
CCTGCATTTGACCCAGCAAGTCACCCAGCTCCAGCTCCTTCTCCCTCTTCTTCTTCGGTA
TTTCCACCTGTAATGCCGTCTAGGCAAATTGTAGAAAGACAACCTCGGATGCTGGACTTC
AGGGTTGAGTACAGAGACAGAAATGTTGATGTGGTACTTGAAGACAGCTGTACTGTTGGA
GAAATTAAGCAGATTCTAGAAAACGAACTTCAGATACCTATGTCTAAAATGCTGTTAAAA
GGCTGGAAGACTGGAGATGTGGAAGACAGTACGGTCTTAAAATCACTACACTTGCCAAAA
AACAACAGTCTTTATGTCCTTACACCAGACTTGCCACCTCCTTCATCATCTAGTCATGCT
GGTGCCCTGCAGGAGTCATTAAATCAAAACTTCATGCTGATCATCACCCACCGAGAAGTC
CAGCGGGAGTACAACCTGAACTTCTCAGGAAGCAGTACCATTCAAGAGGTAAAGAGAAAT
GTTTATGACCTTACAAGTATCCCTGTTCGCCATCAGTTATGGGAGGGCTGGCCAACTTCT
GCCACAGATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCAGGCGGGCGGCCCAGGCGCCTGAAGGTTACCGAGTGCATGAACGCCTAGCCTCCC
GCGCTGCCCCGCCCGCCGGCCCGCCGGCCAGCCCGCCCGCTCGTCCGTCCGCTAGCCCGC
CAGCCCCTCGGAGCCCGGCGGCGGCGGCGGCGGCGGCGACGGCCGCAGGAGGCGCCGTCT
CCCTCCCAGGTGCGCGCTTCGTTCCCGGAGCCGCGGAACTCGGCGGCCGCCATGGCGTCC
AACATGGACCGGGAGATGATCCTAGCGGATTTTCAGGCATGTACTGGCATTGAAAACATT
GATGAAGCTATTACACTGCTTGAACAAAATAACTGGGACTTAGTGGCAGCTATCAATGGT
GTGATACCCCAGGAAAATGGCATTCTACAAAGTGACTATGGAGGTGAGACCATACCAGGA
CCTGCATTTGACCCAGCAAGTCACCCAGCTCCAGCTCCTTCTCCCTCTTCTTCTTCGGTA
TTTCCACCTGTAATGCCGTCTAGGCAAATTGTAGAAAGACAACCTCGGATGCTGGACTTC
AGGGTTGAGTACAGAGACAGAAATGTTGATGTGGTACTTGAAGACAGCTGTACTGTTGGA
GAAATTAAGCAGATTCTAGAAAACGAACTTCAGATACCTATGTCTAAAATGCTGTTAAAA
GGCTGGAAGACTGGAGATGTGGAAGACAGTACGGTCTTAAAATCACTACACTTGCCAAAA
AACAACAGTCTTTATGTCCTTACACCAGACTTGCCACCTCCTTCATCATCTAGTCATGCT
GGTGCCCTGCAGGAGTCATTAAATCAAAACTTCATGCTGATCATCACCCACCGAGAAGTC
CAGCGGGAGTACAACCTGAACTTCTCAGGAAGCAGTACCATTCAAGAGGTAAAGAGAAAT
GTTTATGACCTTACAAGTATCCCTGTTCGCCATCAGTTATGGGAGGGCTGGCCAACTTCT
GCCACAGATGAC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               391-599, gnl|bosTau2|chr3 (66313275-66313067)
               

               
               391-599, gnl|Hg17|chr1 (50965900-50965692)
               

               
               391-599, gnl|Mm7|chr4 (109103827-109104032)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               391-599, gnl|bosTau2|chr3 (66313275-66313067)
               

               
               391-599, gnl|Hg17|chr1 (50965900-50965692)
               

               
               391-599, gnl|Mm7|chr4 (109103827-109104032)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	391-599, gnl\|bosTau2\|chr3 (66313275-66313067)
	391-599, gnl\|Hg17\|chr1 (50965900-50965692)
	391-599, gnl\|Mm7\|chr4 (109103827-109104032)