Non-Coding RNA Search

Ss1.1-Pla1-C0000037_B17.5

Sequence:


               
               ATCCTTAAGACTGTGATGAGAGCATTTATCATTTTGTATGCATTGAGGAAGACATTTATT
ATGGTTTTTAAGATACTTGGACATCTGCATCTTCAGCTTATAAGATCTACAATGCACCTG
AAAAGCAACCAAATTATTTTTTGCTGAAACTAGATGTTTTTACATGAAAAATACTGTATG
TGTTGTCTAAGATGTCAATTTTATAAATCTGTATTCAGATTTCATTCTTTGTTAGCTCAC
TTTATAATTTGTATTTTTTTACTGTATAGACTAAATATATTCTATTTACATGTATGTAAA
CTCATTACTTTTTTCCTGTGAACAGTATTGAAAAACCCCAACTGATAATGAAATTAATTA
ACTGTCTGTCTCCCTTGTCTTAGGGTATTCTGTAGATTGGCTACAGATTTCTTAAACCTG
AAATGATCTTTACACTGTAATTCTCAGTATACTGATTATGGAGAAACACTTGTTTTGATT
TTGTTATACTTGACAACTTTATTACAATGTGAATTAATTGCACTGCTAAGTAGGAAGAGG
TGTAACTTTTGTTTGTTACTATTCACATCTGAGTTTTTTTCTGTATAGGCAATATTATAT
TGACACCTTTTACAGATCTTAATGTAGCTTTTTCCATATAAATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTTAAGACTGTGATGAGAGCATTTATCATTTTGTATGCATTGAGGAAGACATTTATT
ATGGTTTTTAAGATACTTGGACATCTGCATCTTCAGCTTATAAGATCTACAATGCACCTG
AAAAGCAACCAAATTATTTTTTGCTGAAACTAGATGTTTTTACATGAAAAATACTGTATG
TGTTGTCTAAGATGTCAATTTTATAAATCTGTATTCAGATTTCATTCTTTGTTAGCTCAC
TTTATAATTTGTATTTTTTTACTGTATAGACTAAATATATTCTATTTACATGTATGTAAA
CTCATTACTTTTTTCCTGTGAACAGTATTGAAAAACCCCAACTGATAATGAAATTAATTA
ACTGTCTGTCTCCCTTGTCTTAGGGTATTCTGTAGATTGGCTACAGATTTCTTAAACCTG
AAATGATCTTTACACTGTAATTCTCAGTATACTGATTATGGAGAAACACTTGTTTTGATT
TTGTTATACTTGACAACTTTATTACAATGTGAATTAATTGCACTGCTAAGTAGGAAGAGG
TGTAACTTTTGTTTGTTACTATTCACATCTGAGTTTTTTTCTGTATAGGCAATATTATAT
TGACACCTTTTACAGATCTTAATGTAGCTTTTTCCATATAAATAAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               498-609, - strand, RNAz p=0.695163

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-609, - strand, RNAz p=0.695163

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr26 (95377-94730)
               

               
               1-648, gnl|Hg17|chr10 (59798699-59799349)
               

               
               1-648, gnl|Mm7|chr10 (70857877-70857210)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr26 (95377-94730)
               

               
               1-648, gnl|Hg17|chr10 (59798699-59799349)
               

               
               1-648, gnl|Mm7|chr10 (70857877-70857210)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ctl (0.153069)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)

	1-648, gnl\|bosTau2\|chr26 (95377-94730)
	1-648, gnl\|Hg17\|chr10 (59798699-59799349)
	1-648, gnl\|Mm7\|chr10 (70857877-70857210)