Non-Coding RNA Search

Ss1.1-Pla1-C0000037_M12.5

Sequence:


               
               TCAGGATTGGCTTGTGTGTTTCACTTTTAGGGAGAGTCCTATTTTGATTATTGTATTTAT
TCCATATTCATGTAAACAAAAATTTAGTTTTTGTTCTTAATTGCACTCTAAAAGGTTCAG
GGAACCGTTATTATATATGTATCAGAGGCCTATAATGAAGCTTTATACGTGTAGCTATTC
TATATATAATTCTGTACATAGCCTATATTTCCAGTGAAAATGTAAGCCGTTTATTTTATA
TTAAAATAAGCACTGTGCTCAGAACAGTGCAGATTCCTTTCTATCATTTTTGTACAGTCT
GCTGCACTAGAGATCTGGTTTTGCTATTAGACTGTAGGAAGGGTAGCATATTGTTCTTCC
CCAGCTGGTTGTTTCACGGTGCCGGGTTTTCTGGGTGTCCAAAAGGAAGACGAGTGGCAA
CAGCGGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGATTGGCTTGTGTGTTTCACTTTTAGGGAGAGTCCTATTTTGATTATTGTATTTAT
TCCATATTCATGTAAACAAAAATTTAGTTTTTGTTCTTAATTGCACTCTAAAAGGTTCAG
GGAACCGTTATTATATATGTATCAGAGGCCTATAATGAAGCTTTATACGTGTAGCTATTC
TATATATAATTCTGTACATAGCCTATATTTCCAGTGAAAATGTAAGCCGTTTATTTTATA
TTAAAATAAGCACTGTGCTCAGAACAGTGCAGATTCCTTTCTATCATTTTTGTACAGTCT
GCTGCACTAGAGATCTGGTTTTGCTATTAGACTGTAGGAAGGGTAGCATATTGTTCTTCC
CCAGCTGGTTGTTTCACGGTGCCGGGTTTTCTGGGTGTCCAAAAGGAAGACGAGTGGCAA
CAGCGGGGGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-357, + strand, RNAz p=0.996098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-357, + strand, RNAz p=0.996098

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               159-357, BP156908 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|BP156908.1|), blast E-value=0, identity=100% 
               

               
               159-347, fs886.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA 
(gb|CF118724.1|), blast E-value=0, identity=97.37% 
               

               
               159-347, 4058254 BARC 8BOV Bos taurus cDNA clone 8BOV_4P18 5', mRNA sequence 
(gb|CK834078.1|), blast E-value=0, identity=97.37% 
               

               
               159-347, 1184743 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN284458.1|), 
blast E-value=0, identity=97.37% 
               

               
               159-347, 1250545 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN513578.1|), 
blast E-value=0, identity=97.37% 
               

               
               159-347, LB0284.CR_A17 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV907825.1|), 
blast E-value=0, identity=97.37%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               159-357, BP156908 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|BP156908.1|), blast E-value=0, identity=100% 
               

               
               159-347, fs886.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA 
(gb|CF118724.1|), blast E-value=0, identity=97.37% 
               

               
               159-347, 4058254 BARC 8BOV Bos taurus cDNA clone 8BOV_4P18 5', mRNA sequence 
(gb|CK834078.1|), blast E-value=0, identity=97.37% 
               

               
               159-347, 1184743 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN284458.1|), 
blast E-value=0, identity=97.37% 
               

               
               159-347, 1250545 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN513578.1|), 
blast E-value=0, identity=97.37% 
               

               
               159-347, LB0284.CR_A17 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV907825.1|), 
blast E-value=0, identity=97.37%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005688, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005688, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-427, gnl|bosTau2|chr1 (51567266-51566842)
               

               
               1-427, gnl|Hg17|chr3 (185121666-185121241)
               

               
               1-427, gnl|Mm7|chr16 (19882507-19882091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-427, gnl|bosTau2|chr1 (51567266-51566842)
               

               
               1-427, gnl|Hg17|chr3 (185121666-185121241)
               

               
               1-427, gnl|Mm7|chr16 (19882507-19882091)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	159-357, BP156908 full-length enriched swine cDNA library, adult spleen Sus (dbj\|BP156908.1\|), blast E-value=0, identity=100%
	159-347, fs886.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA (gb\|CF118724.1\|), blast E-value=0, identity=97.37%
	159-347, 4058254 BARC 8BOV Bos taurus cDNA clone 8BOV_4P18 5', mRNA sequence (gb\|CK834078.1\|), blast E-value=0, identity=97.37%
	159-347, 1184743 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN284458.1\|), blast E-value=0, identity=97.37%
	159-347, 1250545 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN513578.1\|), blast E-value=0, identity=97.37%
	159-347, LB0284.CR_A17 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV907825.1\|), blast E-value=0, identity=97.37%

	1-427, gnl\|bosTau2\|chr1 (51567266-51566842)
	1-427, gnl\|Hg17\|chr3 (185121666-185121241)
	1-427, gnl\|Mm7\|chr16 (19882507-19882091)