Non-Coding RNA Search

Ss1.1-Pla1-C0000039_K07.5

Sequence:


               
               CCACCGGCGCCTGCAACCAAATAGGACTCGGACTCGGTGATGCTTCTGTCATCTTTGCCT
TCAACGAAAACTGTCAAAAGGGAAGAGTGTGGGCGATGGGGGAGAGGGCGAGGCGGGGGC
GCCGCCCTCGGGCTGGGTCGCCCGCAGCCCTCGCTGGGATGAGGCCCGGCTGCCGAAGGA
CGGGGCCGGGCTTTGTCCCAGGTCCTCGCGGAAGGCGCGCCCGGGCCGTCGCATCTCCGG
AGGAGGGCTGCGTCTGAGGAAAAAACCCTTGCTGCTTTAGGCCCTGTAGGGTATTTGATC
ATTATATTTTTAGCATTTAATTCTCTCCTCCTATTTATTGACTTTTGACAATTACTCAGG
TTTGCGATAAAGAAACAACAGCAACCCCCCCCCCCCCCCAGCAGTGTGCCCGCCGGCCCG
CGCGGTGACTGCCTGTCCATCCCGGCTCCGCGGGGCCGCCGTTGGGGCGCAGGGATGGTT
TCACATGAGATGCTGAACTGGTCCACGGTGTAGCCTCGAAGTTAGACCCCGCCCCCGTCT
CTCCTCCCCTTTGCTTCCTGTTTCCTACGGGACCGCGCGCGCGTGCACCGCCACGCGTGG
GTCCGGAGTGCCTGGGCCGCGGAGGGGCCGCCCGCTCTCTGCCTCTAGCAGTAACGGCTG
CAGCTTTTTGCATGACGTCTTCAATCCTAGGTGCACAAAGCACATTTATCAGTATTTCTT
TCGCCAGCTGGTGAAGTCAGACAACCCACCCAAAGATTGATTTGTGTGTGCGTGTGTGCG
TGTGTGCGTGTGTGTGTCTGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCGGCGCCTGCAACCAAATAGGACTCGGACTCGGTGATGCTTCTGTCATCTTTGCCT
TCAACGAAAACTGTCAAAAGGGAAGAGTGTGGGCGATGGGGGAGAGGGCGAGGCGGGGGC
GCCGCCCTCGGGCTGGGTCGCCCGCAGCCCTCGCTGGGATGAGGCCCGGCTGCCGAAGGA
CGGGGCCGGGCTTTGTCCCAGGTCCTCGCGGAAGGCGCGCCCGGGCCGTCGCATCTCCGG
AGGAGGGCTGCGTCTGAGGAAAAAACCCTTGCTGCTTTAGGCCCTGTAGGGTATTTGATC
ATTATATTTTTAGCATTTAATTCTCTCCTCCTATTTATTGACTTTTGACAATTACTCAGG
TTTGCGATAAAGAAACAACAGCAACCCCCCCCCCCCCCCAGCAGTGTGCCCGCCGGCCCG
CGCGGTGACTGCCTGTCCATCCCGGCTCCGCGGGGCCGCCGTTGGGGCGCAGGGATGGTT
TCACATGAGATGCTGAACTGGTCCACGGTGTAGCCTCGAAGTTAGACCCCGCCCCCGTCT
CTCCTCCCCTTTGCTTCCTGTTTCCTACGGGACCGCGCGCGCGTGCACCGCCACGCGTGG
GTCCGGAGTGCCTGGGCCGCGGAGGGGCCGCCCGCTCTCTGCCTCTAGCAGTAACGGCTG
CAGCTTTTTGCATGACGTCTTCAATCCTAGGTGCACAAAGCACATTTATCAGTATTTCTT
TCGCCAGCTGGTGAAGTCAGACAACCCACCCAAAGATTGATTTGTGTGTGCGTGTGTGCG
TGTGTGCGTGTGTGTGTCTGTGTG

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               494-794, gnl|bosTau2|chr9 (59119861-59120177)
               

               
               494-794, gnl|Hg17|chr6 (160497059-160497372)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               494-794, gnl|bosTau2|chr9 (59119861-59120177)
               

               
               494-794, gnl|Hg17|chr6 (160497059-160497372)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sme (0.610874)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	494-794, gnl\|bosTau2\|chr9 (59119861-59120177)
	494-794, gnl\|Hg17\|chr6 (160497059-160497372)

	sme (0.610874)
	jca (0.22792)
	mas (0.210305)
	nco (0.161734)
	pgl (0.118483)
	jej (0.0989218)