Non-Coding RNA Search

Ss1.1-Pla1-C0000039_L14.5

Sequence:


               
               TACTTTTTATGTGCTATGCAAAATAGACATCTTTAACATAGTCCCGTTGCTATGGTAACA
CTTTGCTTTCTGAATTGGGAGGAAAAAAAATGTAGCAACAGCATTTTAAGGTTCTCAAAC
CTCCAGTGCATACCTGCAAAAATGAGTTGTCACAGAAATTCTTCTTCTCTATTTCCTGAA
CCTGAAAATGATGTTGGTCCAAAGTGCGTGTGTGTATGTGTGAGTGGGTGTGTGGTATAC
ATGTGTACATATATGTATAATATATATCTACAATATATATTATATATATCTATATCATAT
TTCTGTGGAAGGTTGCTATGGCGACCAGCCACAGTACATATGTAATTCTTTGCATCACCC
TCACCTCTCCTGTACGTGCATTCATACAAGATTTTCTTGTAAGCCATCGGAAATTACCTT
TCGGATGGGGGAGAGGGGCAAGACGGGGGAACATGGGAAATAGTCTGATTTTACTGAAAT
CGAAGGTGTGTGTCATCGGTTGGCTACCTTTTGGGTATATGCTAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTTTATGTGCTATGCAAAATAGACATCTTTAACATAGTCCCGTTGCTATGGTAACA
CTTTGCTTTCTGAATTGGGAGGAAAAAAAATGTAGCAACAGCATTTTAAGGTTCTCAAAC
CTCCAGTGCATACCTGCAAAAATGAGTTGTCACAGAAATTCTTCTTCTCTATTTCCTGAA
CCTGAAAATGATGTTGGTCCAAAGTGCGTGTGTGTATGTGTGAGTGGGTGTGTGGTATAC
ATGTGTACATATATGTATAATATATATCTACAATATATATTATATATATCTATATCATAT
TTCTGTGGAAGGTTGCTATGGCGACCAGCCACAGTACATATGTAATTCTTTGCATCACCC
TCACCTCTCCTGTACGTGCATTCATACAAGATTTTCTTGTAAGCCATCGGAAATTACCTT
TCGGATGGGGGAGAGGGGCAAGACGGGGGAACATGGGAAATAGTCTGATTTTACTGAAAT
CGAAGGTGTGTGTCATCGGTTGGCTACCTTTTGGGTATATGCTAAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               71-460, + strand, RNAz p=0.9958

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-460, + strand, RNAz p=0.9958

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               206-316, + strand, RNAmicro p=0.999783

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               206-316, + strand, RNAmicro p=0.999783

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               301-460, 224561 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF075488.1|), 
blast E-value=4.00001e-41, identity=89.44% 
               

               
               301-460, 4082047 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 3', mRNA 
(gb|CK966819.1|), blast E-value=4.00001e-41, identity=89.44% 
               

               
               301-203, 4082431 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 5', mRNA 
(gb|CK967352.1|), blast E-value=1e-38, identity=94.64% 
               

               
               301-203, LB03026.CR_P12 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932801.1|), 
blast E-value=1e-38, identity=94.64% 
               

               
               301-460, 000927BEMN025331HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY105036.1|), blast E-value=4.00001e-41, identity=89.44% 
               

               
               301-203, LB02976.CR_C18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE360698.1|), 
blast E-value=1e-38, identity=94.64%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               301-460, 224561 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF075488.1|), 
blast E-value=4.00001e-41, identity=89.44% 
               

               
               301-460, 4082047 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 3', mRNA 
(gb|CK966819.1|), blast E-value=4.00001e-41, identity=89.44% 
               

               
               301-203, 4082431 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 5', mRNA 
(gb|CK967352.1|), blast E-value=1e-38, identity=94.64% 
               

               
               301-203, LB03026.CR_P12 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932801.1|), 
blast E-value=1e-38, identity=94.64% 
               

               
               301-460, 000927BEMN025331HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY105036.1|), blast E-value=4.00001e-41, identity=89.44% 
               

               
               301-203, LB02976.CR_C18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE360698.1|), 
blast E-value=1e-38, identity=94.64%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004093, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004093, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr12 (45198701-45198164)
               

               
               1-528, gnl|Hg17|chr13 (105941383-105940855)
               

               
               1-528, gnl|Mm7|chr8 (8588612-8588085)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr12 (45198701-45198164)
               

               
               1-528, gnl|Hg17|chr13 (105941383-105940855)
               

               
               1-528, gnl|Mm7|chr8 (8588612-8588085)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               pla (0.133672)

	301-460, 224561 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF075488.1\|), blast E-value=4.00001e-41, identity=89.44%
	301-460, 4082047 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 3', mRNA (gb\|CK966819.1\|), blast E-value=4.00001e-41, identity=89.44%
	301-203, 4082431 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 5', mRNA (gb\|CK967352.1\|), blast E-value=1e-38, identity=94.64%
	301-203, LB03026.CR_P12 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV932801.1\|), blast E-value=1e-38, identity=94.64%
	301-460, 000927BEMN025331HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY105036.1\|), blast E-value=4.00001e-41, identity=89.44%
	301-203, LB02976.CR_C18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE360698.1\|), blast E-value=1e-38, identity=94.64%

	1-528, gnl\|bosTau2\|chr12 (45198701-45198164)
	1-528, gnl\|Hg17\|chr13 (105941383-105940855)
	1-528, gnl\|Mm7\|chr8 (8588612-8588085)