Ss1.1-Pla1-C0000039_L14.5
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TACTTTTTATGTGCTATGCAAAATAGACATCTTTAACATAGTCCCGTTGCTATGGTAACA
CTTTGCTTTCTGAATTGGGAGGAAAAAAAATGTAGCAACAGCATTTTAAGGTTCTCAAAC
CTCCAGTGCATACCTGCAAAAATGAGTTGTCACAGAAATTCTTCTTCTCTATTTCCTGAA
CCTGAAAATGATGTTGGTCCAAAGTGCGTGTGTGTATGTGTGAGTGGGTGTGTGGTATAC
ATGTGTACATATATGTATAATATATATCTACAATATATATTATATATATCTATATCATAT
TTCTGTGGAAGGTTGCTATGGCGACCAGCCACAGTACATATGTAATTCTTTGCATCACCC
TCACCTCTCCTGTACGTGCATTCATACAAGATTTTCTTGTAAGCCATCGGAAATTACCTT
TCGGATGGGGGAGAGGGGCAAGACGGGGGAACATGGGAAATAGTCTGATTTTACTGAAAT
CGAAGGTGTGTGTCATCGGTTGGCTACCTTTTGGGTATATGCTAAACT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TACTTTTTATGTGCTATGCAAAATAGACATCTTTAACATAGTCCCGTTGCTATGGTAACA
CTTTGCTTTCTGAATTGGGAGGAAAAAAAATGTAGCAACAGCATTTTAAGGTTCTCAAAC
CTCCAGTGCATACCTGCAAAAATGAGTTGTCACAGAAATTCTTCTTCTCTATTTCCTGAA
CCTGAAAATGATGTTGGTCCAAAGTGCGTGTGTGTATGTGTGAGTGGGTGTGTGGTATAC
ATGTGTACATATATGTATAATATATATCTACAATATATATTATATATATCTATATCATAT
TTCTGTGGAAGGTTGCTATGGCGACCAGCCACAGTACATATGTAATTCTTTGCATCACCC
TCACCTCTCCTGTACGTGCATTCATACAAGATTTTCTTGTAAGCCATCGGAAATTACCTT
TCGGATGGGGGAGAGGGGCAAGACGGGGGAACATGGGAAATAGTCTGATTTTACTGAAAT
CGAAGGTGTGTGTCATCGGTTGGCTACCTTTTGGGTATATGCTAAACT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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206-316, + strand, RNAmicro p=0.999783 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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206-316, + strand, RNAmicro p=0.999783 |
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301-460, 224561 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF075488.1|),
blast E-value=4.00001e-41, identity=89.44% |
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301-460, 4082047 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 3', mRNA
(gb|CK966819.1|), blast E-value=4.00001e-41, identity=89.44% |
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301-203, 4082431 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 5', mRNA
(gb|CK967352.1|), blast E-value=1e-38, identity=94.64% |
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301-203, LB03026.CR_P12 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932801.1|),
blast E-value=1e-38, identity=94.64% |
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301-460, 000927BEMN025331HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY105036.1|), blast E-value=4.00001e-41, identity=89.44% |
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301-203, LB02976.CR_C18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE360698.1|),
blast E-value=1e-38, identity=94.64% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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301-460, 224561 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF075488.1|),
blast E-value=4.00001e-41, identity=89.44% |
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301-460, 4082047 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 3', mRNA
(gb|CK966819.1|), blast E-value=4.00001e-41, identity=89.44% |
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301-203, 4082431 BARC 9BOV Bos taurus cDNA clone 9BOV20_D08 5', mRNA
(gb|CK967352.1|), blast E-value=1e-38, identity=94.64% |
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301-203, LB03026.CR_P12 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV932801.1|),
blast E-value=1e-38, identity=94.64% |
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301-460, 000927BEMN025331HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY105036.1|), blast E-value=4.00001e-41, identity=89.44% |
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301-203, LB02976.CR_C18 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE360698.1|),
blast E-value=1e-38, identity=94.64% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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tbr (0.154178) |
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pla (0.133672) |
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tbr (0.154178) |
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pla (0.133672) |