Non-Coding RNA Search

Ss1.1-Pla1-C0000039_P09.5

Sequence:


               
               AACAGAACCAAAAAAACTCAAAGCAAGTGTCAAGTAATTTTCCTTCTAATGGTGGGTTAA
TTGGAGTTTAATTCATCAAAGGGAAATGGTATCTACAGAACTGCTTTGCATGTTATAAAA
ATGCTTATTTCGCAACTTGCTTTTCACATAACTTCTTACCGTTAATTTGCCTAACAGACA
TTGATCGCCCCAAAGGACTGGCATTCACTGATGTGGATGTCGATTCCATCAAAATTGCTT
GGGAAAGCCCACAGGGGCAAGTTTCCAGGTACAGGGTGACCTACTCAAGCCCTGAGGATG
GAATCCATGAGCTATTCCCTGCACCTGATGGTGAAGAAGACACTGCAGAGCTGCAAGGCC
TCAGGCCGGGTTCTGAGTACACAGTCAGTGTGGTTGCCTTGCACGATGATATGGAGAGCC
AGCCCCTGATTGGAACCCAGTCCACAGGTATATCGTGAACTGCACCACTGGGTGCTCATG
GGAGCAGCGGCTTTAAGCCCTGCTGAATGAAGTATACTTTATTGGGCTACTGAGTCCCAT
GTAAGGGGGTACCAAAAAAGCAGCCACTCTTAGGAAAGACCCTCTTTAAAGAGGAGTAGT
AATAGGCGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGAACCAAAAAAACTCAAAGCAAGTGTCAAGTAATTTTCCTTCTAATGGTGGGTTAA
TTGGAGTTTAATTCATCAAAGGGAAATGGTATCTACAGAACTGCTTTGCATGTTATAAAA
ATGCTTATTTCGCAACTTGCTTTTCACATAACTTCTTACCGTTAATTTGCCTAACAGACA
TTGATCGCCCCAAAGGACTGGCATTCACTGATGTGGATGTCGATTCCATCAAAATTGCTT
GGGAAAGCCCACAGGGGCAAGTTTCCAGGTACAGGGTGACCTACTCAAGCCCTGAGGATG
GAATCCATGAGCTATTCCCTGCACCTGATGGTGAAGAAGACACTGCAGAGCTGCAAGGCC
TCAGGCCGGGTTCTGAGTACACAGTCAGTGTGGTTGCCTTGCACGATGATATGGAGAGCC
AGCCCCTGATTGGAACCCAGTCCACAGGTATATCGTGAACTGCACCACTGGGTGCTCATG
GGAGCAGCGGCTTTAAGCCCTGCTGAATGAAGTATACTTTATTGGGCTACTGAGTCCCAT
GTAAGGGGGTACCAAAAAAGCAGCCACTCTTAGGAAAGACCCTCTTTAAAGAGGAGTAGT
AATAGGCGATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5725426|emb|CAB52436.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5725426|emb|CAB52436.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-573, + strand, RNAz p=0.968952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-573, + strand, RNAz p=0.968952

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX640803, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX640803, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-612, gnl|bosTau2|chr2 (47471770-47472381)
               

               
               5-612, gnl|Hg17|chr2 (216071477-216070884)
               

               
               5-612, gnl|Mm7|chr1 (71845959-71845327)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-612, gnl|bosTau2|chr2 (47471770-47472381)
               

               
               5-612, gnl|Hg17|chr2 (216071477-216070884)
               

               
               5-612, gnl|Mm7|chr1 (71845959-71845327)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	5-612, gnl\|bosTau2\|chr2 (47471770-47472381)
	5-612, gnl\|Hg17\|chr2 (216071477-216070884)
	5-612, gnl\|Mm7\|chr1 (71845959-71845327)