Ss1.1-Pla1-C0000046_M14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCTGGGCATCCCTGATGAAAATTTTGAAGACCACAGCGCTCCACCTTCTCCTGAGGAA AAAGATTCTGGGTTCTTTATGCTGAGGAAGGACAGTGAGAGACGGGCCACGCTTCACAGG ATCCTGACGGAAGACCAAGACAAAGTCGTGAGAAACTTAATGGAATCTTTGGCTCAGGGG GCAGAAGAACCTAAACTAAAGTGGGAGCACATCACAACCCTCGTCACAAGCCTCAGAGAA TTTGTGAGGTCCACCGACCGAAAGATCATAGCCACCACCCTGTCGAAGCTGAAGCTGGAG CTGGACTTTGACAGCCACGGCATCAGTCAAGTCCAGGTGGTGCTCTTTGGTTTTCAAGAT GCTGTCAATAAAGTGCTTCGGAATCATAACATCAAGCCACACTGGATGTTTGCCTTGGAC AGTATCATCCGAAAGGCAGTGCAGACGGCCATTACCATTCTGGTTCCAGAACTGAGGCCA CATTTTAGCCTTGCATCTGAGAGTGATACTGCTGATCAAGAAGACCTAGATGCCGAAGAC GACCATGAGGAACAGCCTGCAAATCAAACTGTCCGAAGACCTCACGCGGTCCTTGAAGAT GCTGTGGCTACCTCAGGGCGTGAGCACGCTGAGTTCTACTGTATCCCACGACTCCCAGAG TGCTCACCGATCACTGAACGTACAGCTTGGAAGGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCTGGGCATCCCTGATGAAAATTTTGAAGACCACAGCGCTCCACCTTCTCCTGAGGAA AAAGATTCTGGGTTCTTTATGCTGAGGAAGGACAGTGAGAGACGGGCCACGCTTCACAGG ATCCTGACGGAAGACCAAGACAAAGTCGTGAGAAACTTAATGGAATCTTTGGCTCAGGGG GCAGAAGAACCTAAACTAAAGTGGGAGCACATCACAACCCTCGTCACAAGCCTCAGAGAA TTTGTGAGGTCCACCGACCGAAAGATCATAGCCACCACCCTGTCGAAGCTGAAGCTGGAG CTGGACTTTGACAGCCACGGCATCAGTCAAGTCCAGGTGGTGCTCTTTGGTTTTCAAGAT GCTGTCAATAAAGTGCTTCGGAATCATAACATCAAGCCACACTGGATGTTTGCCTTGGAC AGTATCATCCGAAAGGCAGTGCAGACGGCCATTACCATTCTGGTTCCAGAACTGAGGCCA CATTTTAGCCTTGCATCTGAGAGTGATACTGCTGATCAAGAAGACCTAGATGCCGAAGAC GACCATGAGGAACAGCCTGCAAATCAAACTGTCCGAAGACCTCACGCGGTCCTTGAAGAT GCTGTGGCTACCTCAGGGCGTGAGCACGCTGAGTTCTACTGTATCCCACGACTCCCAGAG TGCTCACCGATCACTGAACGTACAGCTTGGAAGGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 253-370, + strand, RNAz p=0.720467 | |
| 467-585, - strand, RNAz p=0.786152 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 253-370, + strand, RNAz p=0.720467 | |
| 467-585, - strand, RNAz p=0.786152 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 175-370, gnl|bosTau2|chr9 (43720465-43720660) | |
| 175-370, gnl|canFam2|chr1 (32172904-32173099) | |
| 175-370, gnl|danRer3|chr20 (2262942-2263133) | |
| 175-370, gnl|dasNov1|scaffold_49835 (44508-44693) | |
| 175-370, gnl|echTel1|scaffold_318717 (40333-40138) | |
| 175-370, gnl|fr1|chrUn (177181996-177182174) | |
| 175-370, gnl|galGal2|chr3 (53965527-53965333) | |
| 175-370, gnl|hg17|chr6 (136946360-136946555) | |
| 175-370, gnl|Hg17|chr6 (136946574-136946379) | |
| 175-370, gnl|mm7|chr10 (19849824-19849634) | |
| 175-370, gnl|Mm7|chr10 (19849613-19849808) | |
| 175-370, gnl|monDom2|scaffold_0 (73550395-73550195) | |
| 175-370, gnl|oryCun1|scaffold_214233 (236417-236612) | |
| 175-370, gnl|panTro1|chr5 (139748508-139748703) | |
| 175-370, gnl|rheMac2|chr4 (127250843-127250648) | |
| 175-370, gnl|rn3|chr1 (15397228-15397038) | |
| 175-370, gnl|tetNig1|chr14 (1879388-1879564) | |
| 175-370, gnl|xenTro1|scaffold_188 (1061319-1061145) | |
| 467-696, gnl|bosTau2|chr9 (43733026-43733254) | |
| 467-696, gnl|canFam2|chr1 (32160899-32161163) | |
| 467-696, gnl|danRer3|chr20 (2260777-2261030) | |
| 467-696, gnl|dasNov1|scaffold_44592 (9229-8967) | |
| 467-696, gnl|echTel1|scaffold_318717 (51981-51716) | |
| 467-696, gnl|fr1|chrUn (177181065-177181323) | |
| 467-696, gnl|galGal2|chr3 (53970517-53970241) | |
| 467-696, gnl|hg17|chr6 (136930448-136930713) | |
| 467-696, gnl|Hg17|chr6 (136930708-136930480) | |
| 467-696, gnl|loxAfr1|scaffold_5531 (53324-53059) | |
| 467-696, gnl|mm7|chr10 (19856884-19856623) | |
| 467-696, gnl|Mm7|chr10 (19856627-19856854) | |
| 467-696, gnl|monDom2|scaffold_0 (73573582-73573316) | |
| 467-696, gnl|oryCun1|scaffold_214233 (218927-219187) | |
| 467-696, gnl|panTro1|chr5 (139732584-139732849) | |
| 467-696, gnl|rheMac2|chr4 (127267678-127267413) | |
| 467-696, gnl|rn3|chr1 (15404161-15403900) | |
| 467-696, gnl|tetNig1|chr14 (1878517-1878773) | |
| 467-696, gnl|xenTro1|scaffold_188 (1072171-1071927) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-370, gnl|bosTau2|chr9 (43720465-43720660) | |
| 175-370, gnl|canFam2|chr1 (32172904-32173099) | |
| 175-370, gnl|danRer3|chr20 (2262942-2263133) | |
| 175-370, gnl|dasNov1|scaffold_49835 (44508-44693) | |
| 175-370, gnl|echTel1|scaffold_318717 (40333-40138) | |
| 175-370, gnl|fr1|chrUn (177181996-177182174) | |
| 175-370, gnl|galGal2|chr3 (53965527-53965333) | |
| 175-370, gnl|hg17|chr6 (136946360-136946555) | |
| 175-370, gnl|Hg17|chr6 (136946574-136946379) | |
| 175-370, gnl|mm7|chr10 (19849824-19849634) | |
| 175-370, gnl|Mm7|chr10 (19849613-19849808) | |
| 175-370, gnl|monDom2|scaffold_0 (73550395-73550195) | |
| 175-370, gnl|oryCun1|scaffold_214233 (236417-236612) | |
| 175-370, gnl|panTro1|chr5 (139748508-139748703) | |
| 175-370, gnl|rheMac2|chr4 (127250843-127250648) | |
| 175-370, gnl|rn3|chr1 (15397228-15397038) | |
| 175-370, gnl|tetNig1|chr14 (1879388-1879564) | |
| 175-370, gnl|xenTro1|scaffold_188 (1061319-1061145) | |
| 467-696, gnl|bosTau2|chr9 (43733026-43733254) | |
| 467-696, gnl|canFam2|chr1 (32160899-32161163) | |
| 467-696, gnl|danRer3|chr20 (2260777-2261030) | |
| 467-696, gnl|dasNov1|scaffold_44592 (9229-8967) | |
| 467-696, gnl|echTel1|scaffold_318717 (51981-51716) | |
| 467-696, gnl|fr1|chrUn (177181065-177181323) | |
| 467-696, gnl|galGal2|chr3 (53970517-53970241) | |
| 467-696, gnl|hg17|chr6 (136930448-136930713) | |
| 467-696, gnl|Hg17|chr6 (136930708-136930480) | |
| 467-696, gnl|loxAfr1|scaffold_5531 (53324-53059) | |
| 467-696, gnl|mm7|chr10 (19856884-19856623) | |
| 467-696, gnl|Mm7|chr10 (19856627-19856854) | |
| 467-696, gnl|monDom2|scaffold_0 (73573582-73573316) | |
| 467-696, gnl|oryCun1|scaffold_214233 (218927-219187) | |
| 467-696, gnl|panTro1|chr5 (139732584-139732849) | |
| 467-696, gnl|rheMac2|chr4 (127267678-127267413) | |
| 467-696, gnl|rn3|chr1 (15404161-15403900) | |
| 467-696, gnl|tetNig1|chr14 (1878517-1878773) | |
| 467-696, gnl|xenTro1|scaffold_188 (1072171-1071927) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) |