Non-Coding RNA Search

Ss1.1-Pla1-C0000048_M01.5

Sequence:


               
               GCAAGCCACAGAAGCTGTAGGAACACCCTTCTCAAGGAGGTAGGATGGAGCAGGGAATCT
GGTCTAGATCAGCACCAGGGAAGGAGGAGAACCCTTTCCTCACCTTGAAGCTAAAGCCAC
TCTGGATGCGCTTCTGGATGCTCTCATGCTCAGCCAGCTGACCACAAAGCACTGCATACC
TAGGGGGAAGCAGCAGCAAGCTCAGGCCAAGGACTAAGTACCATCCCTGCCAGGAATAGG
CTTCCCACCCATGCCCTCATTGCACTGCCCCTGTGCCCACATCCAGAGCTGAAAATAACA
TTTCCATCTGTATACAATTCCTCTTCTCATAGACCTGTGGTCCCAATTCATATGCTTTAG
CAAATACAGTGGTAGGCTCACAGTTCTCCAAAGTACACTAGGTACAGAAAAGGTGAGTCT
TTCACAGTATTTTAAGTAGGTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGCCACAGAAGCTGTAGGAACACCCTTCTCAAGGAGGTAGGATGGAGCAGGGAATCT
GGTCTAGATCAGCACCAGGGAAGGAGGAGAACCCTTTCCTCACCTTGAAGCTAAAGCCAC
TCTGGATGCGCTTCTGGATGCTCTCATGCTCAGCCAGCTGACCACAAAGCACTGCATACC
TAGGGGGAAGCAGCAGCAAGCTCAGGCCAAGGACTAAGTACCATCCCTGCCAGGAATAGG
CTTCCCACCCATGCCCTCATTGCACTGCCCCTGTGCCCACATCCAGAGCTGAAAATAACA
TTTCCATCTGTATACAATTCCTCTTCTCATAGACCTGTGGTCCCAATTCATATGCTTTAG
CAAATACAGTGGTAGGCTCACAGTTCTCCAAAGTACACTAGGTACAGAAAAGGTGAGTCT
TTCACAGTATTTTAAGTAGGTCGC

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               17-270, gnl|bosTau2|chr10 (26629178-26629423)
               

               
               17-270, gnl|Hg17|chr15 (38817917-38818164)
               


               
               305-422, gnl|bosTau2|chr10 (26629431-26629547)
               

               
               305-422, gnl|Hg17|chr15 (38818200-38818317)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-270, gnl|bosTau2|chr10 (26629178-26629423)
               

               
               17-270, gnl|Hg17|chr15 (38817917-38818164)
               


               
               305-422, gnl|bosTau2|chr10 (26629431-26629547)
               

               
               305-422, gnl|Hg17|chr15 (38818200-38818317)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	17-270, gnl\|bosTau2\|chr10 (26629178-26629423)
	17-270, gnl\|Hg17\|chr15 (38817917-38818164)

	305-422, gnl\|bosTau2\|chr10 (26629431-26629547)
	305-422, gnl\|Hg17\|chr15 (38818200-38818317)