Non-Coding RNA Search

Ss1.1-Pla1-C0000934_F10.5

Sequence:


               
               TAAGTAGTAGTGCAAAGGCAGCTAAAGTACAAAGAGCTCCAAGGATTTCAGGAGAAGATA
GAAGTTCACCTGGAAACAGAACAGGAAACAATGGTCAAATCCAACTGTGGCAGTTTTTGC
TAGAACTTCTTACTGACAAGGATGCTCGAGATTGCATTTCTTGGGTTGGTGATGAAGGAG
AGTTTAAGCTAAATCAGCCTGAACTGGTTGCACAGAAATGGGGACAACGTAAAAATAAAC
CCACCATGAACTATGAGAAACTTAGTCGTGCATTAAGGTATTATTATGATGGGGACATGA
TTTGTAAAGTTCAAGGCAAGAGATTTGTATACAAGTTTGTCTGTGACTTGAAGACTCTTA
TTGGATACAGTGCAGCAGAGTTGAACCGTTTGGTCACAGAATGTGAACAGAAGAAACTTG
CAAAGATGCAGCTCCATGGAATTGCCCAGCCAGTCACAGCAGTAGCCCTTGCTACTGCAT
CTCTGCAAACAGAAAAAGATAATTGAGCCCAGGACCTTCTGGGAGTCCAAGGTCTTTCTT
AAATGTTAGAGCAAGTATTGCTCTTACCTTTATTACTGAATTTGAATCTTCTTTTATTTC
TAGACTGTACGATCTGATGCATGATGTTTTTATAAATATTTCATACTCTTGTGAATTTGG
ATCTTTGTACTTTGAGCATATATTGTAGAAAATGTGTATGTTAAAGGATCACCACAATGT
CTTTCGGCAGACTCATTGTGGGATAGTTTGTTAACAGTCAGGAAAGCTAGAGTGGTCAGT
ATTAATGTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTAGTAGTGCAAAGGCAGCTAAAGTACAAAGAGCTCCAAGGATTTCAGGAGAAGATA
GAAGTTCACCTGGAAACAGAACAGGAAACAATGGTCAAATCCAACTGTGGCAGTTTTTGC
TAGAACTTCTTACTGACAAGGATGCTCGAGATTGCATTTCTTGGGTTGGTGATGAAGGAG
AGTTTAAGCTAAATCAGCCTGAACTGGTTGCACAGAAATGGGGACAACGTAAAAATAAAC
CCACCATGAACTATGAGAAACTTAGTCGTGCATTAAGGTATTATTATGATGGGGACATGA
TTTGTAAAGTTCAAGGCAAGAGATTTGTATACAAGTTTGTCTGTGACTTGAAGACTCTTA
TTGGATACAGTGCAGCAGAGTTGAACCGTTTGGTCACAGAATGTGAACAGAAGAAACTTG
CAAAGATGCAGCTCCATGGAATTGCCCAGCCAGTCACAGCAGTAGCCCTTGCTACTGCAT
CTCTGCAAACAGAAAAAGATAATTGAGCCCAGGACCTTCTGGGAGTCCAAGGTCTTTCTT
AAATGTTAGAGCAAGTATTGCTCTTACCTTTATTACTGAATTTGAATCTTCTTTTATTTC
TAGACTGTACGATCTGATGCATGATGTTTTTATAAATATTTCATACTCTTGTGAATTTGG
ATCTTTGTACTTTGAGCATATATTGTAGAAAATGTGTATGTTAAAGGATCACCACAATGT
CTTTCGGCAGACTCATTGTGGGATAGTTTGTTAACAGTCAGGAAAGCTAGAGTGGTCAGT
ATTAATGTCTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2981725|pdb|1AWC|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2981725|pdb|1AWC|A

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               434-548, - strand, RNAz p=0.734895
               

               
               668-792, + strand, RNAz p=0.908438

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-548, - strand, RNAz p=0.734895
               

               
               668-792, + strand, RNAz p=0.908438

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002040, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002040, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               275-792, gnl|bosTau2|chr1 (8035309-8035828)
               

               
               275-792, gnl|Hg17|chr21 (26063183-26063707)
               

               
               275-792, gnl|Mm7|chr16 (84858960-84859476)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               275-792, gnl|bosTau2|chr1 (8035309-8035828)
               

               
               275-792, gnl|Hg17|chr21 (26063183-26063707)
               

               
               275-792, gnl|Mm7|chr16 (84858960-84859476)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	434-548, - strand, RNAz p=0.734895
	668-792, + strand, RNAz p=0.908438

	275-792, gnl\|bosTau2\|chr1 (8035309-8035828)
	275-792, gnl\|Hg17\|chr21 (26063183-26063707)
	275-792, gnl\|Mm7\|chr16 (84858960-84859476)