Ss1.1-Pla1-C0000935_D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGGCTCCGCCAGAGGAAGCAGCGCGGGCCTTGACCGGCGTTGGCTCGCCGCCTCCGC CGCCGCCGCGCCTGTGTCCGGTTCCTCAGGCCTGGCCCGACCCAGTTTGGTCCGCCCGGG CTCAGCGGCCCCGGGGCCGCGGCTCCCGATGGAAATTATACAATATAGGCTATTTGGGTG ACATCTTCCTGAAAGATCTTCAAGAATTACAGAAGACAAAAACACTAATGTATTTGAGAA AGTGGTAAAGTTTAGGGGGAGGGGGAAAAACCTGCTCTCCTGATCTGCATCTTGGCTGGA TGTTAAGATGTCTGTGGACATGAATAGCCAGGGGTCTGACAGCAATGAAGAGGACTATGA CCCAAATTGTGAAGAAGAGGAAGAGGACGAAGACCCTGGGGACATAGAGGACTATTACGT GGGAGTAGCCAGCGATGTGGAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGGCTCCGCCAGAGGAAGCAGCGCGGGCCTTGACCGGCGTTGGCTCGCCGCCTCCGC CGCCGCCGCGCCTGTGTCCGGTTCCTCAGGCCTGGCCCGACCCAGTTTGGTCCGCCCGGG CTCAGCGGCCCCGGGGCCGCGGCTCCCGATGGAAATTATACAATATAGGCTATTTGGGTG ACATCTTCCTGAAAGATCTTCAAGAATTACAGAAGACAAAAACACTAATGTATTTGAGAA AGTGGTAAAGTTTAGGGGGAGGGGGAAAAACCTGCTCTCCTGATCTGCATCTTGGCTGGA TGTTAAGATGTCTGTGGACATGAATAGCCAGGGGTCTGACAGCAATGAAGAGGACTATGA CCCAAATTGTGAAGAAGAGGAAGAGGACGAAGACCCTGGGGACATAGAGGACTATTACGT GGGAGTAGCCAGCGATGTGGAGCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 247-444, - strand, RNAz p=0.973456 | |
| 249-366, + strand, RNAz p=0.632694 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 247-444, - strand, RNAz p=0.973456 | |
| 249-366, + strand, RNAz p=0.632694 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_006321, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-146, gnl|bosTau2|chr22 (39948820-39948964) | |
| 2-146, gnl|canFam2|chr20 (43230095-43229619) | |
| 2-146, gnl|dasNov1|scaffold_29304 (45919-45400) | |
| 2-146, gnl|hg17|chr3 (48931241-48931684) | |
| 2-146, gnl|Hg17|chr3 (48931290-48931433) | |
| 2-146, gnl|mm7|chr9 (108361938-108361475) | |
| 2-146, gnl|Mm7|chr9 (108361889-108361745) | |
| 2-146, gnl|monDom2|scaffold_5 (76564596-76564185) | |
| 2-146, gnl|oryCun1|scaffold_166346 (4881-4431) | |
| 2-146, gnl|panTro1|chr2 (50452642-50453084) | |
| 2-146, gnl|rheMac2|chr2 (87549707-87549255) | |
| 2-146, gnl|rn3|chr8 (113725548-113725089) | |
| 211-444, gnl|bosTau2|chr22 (39953057-39953289) | |
| 211-444, gnl|canFam2|chr20 (43223960-43224168) | |
| 211-444, gnl|dasNov1|scaffold_52322 (41706-41498) | |
| 211-444, gnl|echTel1|scaffold_321446 (3873-3657) | |
| 211-444, gnl|fr1|chrUn (220698434-220698656) | |
| 211-444, gnl|galGal2|chr12 (11669636-11669846) | |
| 211-444, gnl|Hg17|chr3 (48939897-48940138) | |
| 211-444, gnl|hg17|chr4 (104056949-104057174) | |
| 211-444, gnl|mm7|chr17 (63878908-63879121) | |
| 211-444, gnl|Mm7|chr9 (108356884-108356652) | |
| 211-444, gnl|oryCun1|scaffold_158160 (4378-4165) | |
| 211-444, gnl|panTro1|chr3 (120452948-120453149) | |
| 211-444, gnl|rheMac2|chr5 (95759504-95759729) | |
| 211-444, gnl|rn3|chr8 (113718388-113718601) | |
| 211-444, gnl|tetNig1|chr9 (648792-648577) | |
| 211-444, gnl|xenTro1|scaffold_72 (2328168-2328389) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-146, gnl|bosTau2|chr22 (39948820-39948964) | |
| 2-146, gnl|canFam2|chr20 (43230095-43229619) | |
| 2-146, gnl|dasNov1|scaffold_29304 (45919-45400) | |
| 2-146, gnl|hg17|chr3 (48931241-48931684) | |
| 2-146, gnl|Hg17|chr3 (48931290-48931433) | |
| 2-146, gnl|mm7|chr9 (108361938-108361475) | |
| 2-146, gnl|Mm7|chr9 (108361889-108361745) | |
| 2-146, gnl|monDom2|scaffold_5 (76564596-76564185) | |
| 2-146, gnl|oryCun1|scaffold_166346 (4881-4431) | |
| 2-146, gnl|panTro1|chr2 (50452642-50453084) | |
| 2-146, gnl|rheMac2|chr2 (87549707-87549255) | |
| 2-146, gnl|rn3|chr8 (113725548-113725089) | |
| 211-444, gnl|bosTau2|chr22 (39953057-39953289) | |
| 211-444, gnl|canFam2|chr20 (43223960-43224168) | |
| 211-444, gnl|dasNov1|scaffold_52322 (41706-41498) | |
| 211-444, gnl|echTel1|scaffold_321446 (3873-3657) | |
| 211-444, gnl|fr1|chrUn (220698434-220698656) | |
| 211-444, gnl|galGal2|chr12 (11669636-11669846) | |
| 211-444, gnl|Hg17|chr3 (48939897-48940138) | |
| 211-444, gnl|hg17|chr4 (104056949-104057174) | |
| 211-444, gnl|mm7|chr17 (63878908-63879121) | |
| 211-444, gnl|Mm7|chr9 (108356884-108356652) | |
| 211-444, gnl|oryCun1|scaffold_158160 (4378-4165) | |
| 211-444, gnl|panTro1|chr3 (120452948-120453149) | |
| 211-444, gnl|rheMac2|chr5 (95759504-95759729) | |
| 211-444, gnl|rn3|chr8 (113718388-113718601) | |
| 211-444, gnl|tetNig1|chr9 (648792-648577) | |
| 211-444, gnl|xenTro1|scaffold_72 (2328168-2328389) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) | |
| med (0.116252) |