Non-Coding RNA Search

Ss1.1-Pla1-C0000935_D20.5

Sequence:


               
               GGGGCGCACGGGGCCCCGGCCGAGGAGCCGAGTGCCCGAAGATGGTTGACTACCTGGCAA
ACACCGAGATCAACAGCCAGCGCATCGCAGCGGTTGAGAGCTGCTTCGGGGCATCAGGGC
AGCCGCTGGCCCTGCCGGGCCGGGTGCTGCTGGGCGAGGGCGTGCTGACCAAGGAGTGCC
GAAAGAAGGCCAAACCGCGCATCTTCTTCCTCTTCAACGACATCCTGGTGTACGGCAGCA
TCGTGCTCAACAAGCGCAAGTACCGCAGCCAGCACATCATTCCGCTGGAGGAGGTGACGC
TGGAGCCGCTGCCCGAGACCTTGCAGGCCAAGAACCGCTGGATGATCAAGACGGCCAAGA
AGTCCTTCGTGGTATCGGCCGCCTCGGCCACGGAGCGCCAGGAGTGGATCAGCCACATCG
AGGAGTGCGTGCGGCGGCAGCTGCTGGCCACCGGGCTCCAGCCCAGCACGGAGCACGCGG
CACCCTGGATCCCGGACAAGGCCACGGACATCTGCATGCGCTGCACGCAGACGCGCTTCT
CGGCGCTCACGCGGCGCCACCACTGTCGCAAGTGCGGCTTCGTGGTCTGTGCCGAGTGCT
CCCGCGAGCGCTTCCTCCTGCCGCGCCTCTCGCCCAAGCCCCTGCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGCACGGGGCCCCGGCCGAGGAGCCGAGTGCCCGAAGATGGTTGACTACCTGGCAA
ACACCGAGATCAACAGCCAGCGCATCGCAGCGGTTGAGAGCTGCTTCGGGGCATCAGGGC
AGCCGCTGGCCCTGCCGGGCCGGGTGCTGCTGGGCGAGGGCGTGCTGACCAAGGAGTGCC
GAAAGAAGGCCAAACCGCGCATCTTCTTCCTCTTCAACGACATCCTGGTGTACGGCAGCA
TCGTGCTCAACAAGCGCAAGTACCGCAGCCAGCACATCATTCCGCTGGAGGAGGTGACGC
TGGAGCCGCTGCCCGAGACCTTGCAGGCCAAGAACCGCTGGATGATCAAGACGGCCAAGA
AGTCCTTCGTGGTATCGGCCGCCTCGGCCACGGAGCGCCAGGAGTGGATCAGCCACATCG
AGGAGTGCGTGCGGCGGCAGCTGCTGGCCACCGGGCTCCAGCCCAGCACGGAGCACGCGG
CACCCTGGATCCCGGACAAGGCCACGGACATCTGCATGCGCTGCACGCAGACGCGCTTCT
CGGCGCTCACGCGGCGCCACCACTGTCGCAAGTGCGGCTTCGTGGTCTGTGCCGAGTGCT
CCCGCGAGCGCTTCCTCCTGCCGCGCCTCTCGCCCAAGCCCCTGCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21313556|ref|NP_077724.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21313556|ref|NP_077724.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               39-646, gnl|bosTau2|chr14 (43146212-43146819)
               

               
               39-646, gnl|Hg17|chr8 (96235446-96236053)
               

               
               39-646, gnl|Mm7|chr4 (10918490-10917883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-646, gnl|bosTau2|chr14 (43146212-43146819)
               

               
               39-646, gnl|Hg17|chr8 (96235446-96236053)
               

               
               39-646, gnl|Mm7|chr4 (10918490-10917883)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               jca (0.11396)

	39-646, gnl\|bosTau2\|chr14 (43146212-43146819)
	39-646, gnl\|Hg17\|chr8 (96235446-96236053)
	39-646, gnl\|Mm7\|chr4 (10918490-10917883)