Non-Coding RNA Search

Ss1.1-Pla1-C0000936_J08.5

Sequence:


               
               GCGCTTTGCAGGGGGGGAGGAGAGGGAGCCCTAGGCGCGAGCGGGGGAGAGGGGACCTGC
AGCCACAACTTCTTTCTTCCTCTCCTTCCCCTCTGTCCCTCTACCCTTCCCCTTCCCCAT
CATCCAGCCCTTACCTTCTTGGCGGCGTCGGCCCGTAGCGGGCACTGGAAGGGACTCCTC
TGGCAGGTTGCGAAAAAGAAGTCAAACTTGGTGGAAAGTTGTCTCCTGGTTAGAGCGTCT
ATATCCCCGCACCTTCTCAAGATGCTCGGGGGTCCGGGACCCGGGCTGCTGCTGCTGGCC
GTTCTGTCCCTGGGGACAACGGTGCCCTCCACTGGAGCGTCGAAGAGCAAGAGGCAGGCT
CAGCAGATCGTTCAGCCCCAATCCCCGTTGGTTGACAGCCAACGCAAGCCTGGTTGTTAC
GACAATGGAAAACACTATCAGATAAACCAACAATGGGAGCGCACTTACCTGGGCAGTGCC
TTGGTTTGTACCTGTTATGGAGGGAGCCGGGGCTTCAACTGTGAGAGCAAGCCTGAGCGT
AAGTGGTGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTTTGCAGGGGGGGAGGAGAGGGAGCCCTAGGCGCGAGCGGGGGAGAGGGGACCTGC
AGCCACAACTTCTTTCTTCCTCTCCTTCCCCTCTGTCCCTCTACCCTTCCCCTTCCCCAT
CATCCAGCCCTTACCTTCTTGGCGGCGTCGGCCCGTAGCGGGCACTGGAAGGGACTCCTC
TGGCAGGTTGCGAAAAAGAAGTCAAACTTGGTGGAAAGTTGTCTCCTGGTTAGAGCGTCT
ATATCCCCGCACCTTCTCAAGATGCTCGGGGGTCCGGGACCCGGGCTGCTGCTGCTGGCC
GTTCTGTCCCTGGGGACAACGGTGCCCTCCACTGGAGCGTCGAAGAGCAAGAGGCAGGCT
CAGCAGATCGTTCAGCCCCAATCCCCGTTGGTTGACAGCCAACGCAAGCCTGGTTGTTAC
GACAATGGAAAACACTATCAGATAAACCAACAATGGGAGCGCACTTACCTGGGCAGTGCC
TTGGTTTGTACCTGTTATGGAGGGAGCCGGGGCTTCAACTGTGAGAGCAAGCCTGAGCGT
AAGTGGTGGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.906751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.906751

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_054034, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_054034, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-145, gnl|bosTau2|chr2 (47421190-47421332)
               

               
               1-145, gnl|Hg17|chr2 (216126284-216126143)
               


               
               247-428, gnl|bosTau2|chr2 (47421392-47421577)
               

               
               247-428, gnl|dasNov1|scaffold_5480 (41715-41525)
               

               
               247-428, gnl|galGal2|chr7 (4357409-4357622)
               

               
               247-428, gnl|hg17|chr2 (216125851-216126051)
               

               
               247-428, gnl|Hg17|chr2 (216126068-216125867)
               

               
               247-428, gnl|loxAfr1|scaffold_122068 (307-104)
               

               
               247-428, gnl|mm7|chr1 (71894638-71894844)
               

               
               247-428, gnl|Mm7|chr1 (71894861-71894655)
               

               
               247-428, gnl|monDom2|scaffold_39 (6017011-6016795)
               

               
               247-428, gnl|panTro1|chr13 (106297127-106297327)
               

               
               247-428, gnl|rheMac2|chr12 (79251285-79251485)
               

               
               247-428, gnl|rn3|chr9 (70917743-70917949)
               

               
               247-428, gnl|xenTro1|scaffold_49 (934006-934206)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr2 (47421190-47421332)
               

               
               1-145, gnl|Hg17|chr2 (216126284-216126143)
               


               
               247-428, gnl|bosTau2|chr2 (47421392-47421577)
               

               
               247-428, gnl|dasNov1|scaffold_5480 (41715-41525)
               

               
               247-428, gnl|galGal2|chr7 (4357409-4357622)
               

               
               247-428, gnl|hg17|chr2 (216125851-216126051)
               

               
               247-428, gnl|Hg17|chr2 (216126068-216125867)
               

               
               247-428, gnl|loxAfr1|scaffold_122068 (307-104)
               

               
               247-428, gnl|mm7|chr1 (71894638-71894844)
               

               
               247-428, gnl|Mm7|chr1 (71894861-71894655)
               

               
               247-428, gnl|monDom2|scaffold_39 (6017011-6016795)
               

               
               247-428, gnl|panTro1|chr13 (106297127-106297327)
               

               
               247-428, gnl|rheMac2|chr12 (79251285-79251485)
               

               
               247-428, gnl|rn3|chr9 (70917743-70917949)
               

               
               247-428, gnl|xenTro1|scaffold_49 (934006-934206)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)

	1-145, gnl\|bosTau2\|chr2 (47421190-47421332)
	1-145, gnl\|Hg17\|chr2 (216126284-216126143)

	247-428, gnl\|bosTau2\|chr2 (47421392-47421577)
	247-428, gnl\|dasNov1\|scaffold_5480 (41715-41525)
	247-428, gnl\|galGal2\|chr7 (4357409-4357622)
	247-428, gnl\|hg17\|chr2 (216125851-216126051)
	247-428, gnl\|Hg17\|chr2 (216126068-216125867)
	247-428, gnl\|loxAfr1\|scaffold_122068 (307-104)
	247-428, gnl\|mm7\|chr1 (71894638-71894844)
	247-428, gnl\|Mm7\|chr1 (71894861-71894655)
	247-428, gnl\|monDom2\|scaffold_39 (6017011-6016795)
	247-428, gnl\|panTro1\|chr13 (106297127-106297327)
	247-428, gnl\|rheMac2\|chr12 (79251285-79251485)
	247-428, gnl\|rn3\|chr9 (70917743-70917949)
	247-428, gnl\|xenTro1\|scaffold_49 (934006-934206)