Non-Coding RNA Search

Ss1.1-Pla1-C0000940_P10.5

Sequence:


               
               ACATTATTTTATTTGTGCTGGTTCAAGGAGGAAGAAAAAAGTACAAAGGGCTTTATACCA
ATATGTTTATAGTTAGGAGAGATTAACCATCGTCCTGTATGTCTGTGTTTTGCTTTACTT
AGTTGTGTATATAGTGTACATAAAGGACAGATGTCCAAATTTACATCTAGTCTTCCTAGA
TGTTAAAGAGGTTGCCAATGTATGACAAAAGTAGTTAGAAAATAAATACATTGTGAATAC
TTTGTTAAAATTCATACGAAAAATTGTTCTGAAAGCAACTGGAGGAGATGAAATTGTTAG
AATCCCCTCTAAGCATTTCAGATGCTTTATTACACTTGCTTACTAGGTTGATAGAGATGA
GAAGGGGAAGGGTTCTAGGCCCGTGTTCCTGTTTAGAAGACACTTTGAGATTATAGCCTT
TGTGTGCAGTTTATTCAATACTACATGTATGTATAGTAAACTAAAATCCTTATTTGAAAC
ATCTAGTCTTTCTAGATGTTTAAAAGTGTACAACATATGCTAAAAGTAGATAATTAACAC
CTTTTAAGATTTTTTTCTGTTAATTCATAGGAATGGTCATATTTGGGGAATGGGATTGTT
AAACTTGAGCCTTGGAGAGTATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTATTTTATTTGTGCTGGTTCAAGGAGGAAGAAAAAAGTACAAAGGGCTTTATACCA
ATATGTTTATAGTTAGGAGAGATTAACCATCGTCCTGTATGTCTGTGTTTTGCTTTACTT
AGTTGTGTATATAGTGTACATAAAGGACAGATGTCCAAATTTACATCTAGTCTTCCTAGA
TGTTAAAGAGGTTGCCAATGTATGACAAAAGTAGTTAGAAAATAAATACATTGTGAATAC
TTTGTTAAAATTCATACGAAAAATTGTTCTGAAAGCAACTGGAGGAGATGAAATTGTTAG
AATCCCCTCTAAGCATTTCAGATGCTTTATTACACTTGCTTACTAGGTTGATAGAGATGA
GAAGGGGAAGGGTTCTAGGCCCGTGTTCCTGTTTAGAAGACACTTTGAGATTATAGCCTT
TGTGTGCAGTTTATTCAATACTACATGTATGTATAGTAAACTAAAATCCTTATTTGAAAC
ATCTAGTCTTTCTAGATGTTTAAAAGTGTACAACATATGCTAAAAGTAGATAATTAACAC
CTTTTAAGATTTTTTTCTGTTAATTCATAGGAATGGTCATATTTGGGGAATGGGATTGTT
AAACTTGAGCCTTGGAGAGTATGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               86-234, - strand, RNAz p=0.94207
               

               
               419-533, - strand, RNAz p=0.806854

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-234, - strand, RNAz p=0.94207
               

               
               419-533, - strand, RNAz p=0.806854

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-599, gnl|bosTau2|chr13 (44193956-44193370)
               

               
               3-599, gnl|canFam2|chr24 (27864689-27864164)
               

               
               3-599, gnl|dasNov1|scaffold_60408 (4970-5509)
               

               
               3-599, gnl|echTel1|scaffold_299538 (103539-104036)
               

               
               3-599, gnl|Hg17|chr20 (34099156-34098234)
               

               
               3-599, gnl|hg17|chr3 (15436911-15437443)
               

               
               3-599, gnl|loxAfr1|scaffold_7014 (70742-70189)
               

               
               3-599, gnl|mm7|chr2 (135343978-135344473)
               

               
               3-599, gnl|Mm7|chr2 (156130903-156130054)
               

               
               3-599, gnl|oryCun1|scaffold_104333 (113-638)
               

               
               3-599, gnl|panTro1|chr2 (16052594-16053128)
               

               
               3-599, gnl|rheMac2|chr2 (157749057-157749583)
               

               
               3-599, gnl|rn3|chr3 (123557055-123557525)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-599, gnl|bosTau2|chr13 (44193956-44193370)
               

               
               3-599, gnl|canFam2|chr24 (27864689-27864164)
               

               
               3-599, gnl|dasNov1|scaffold_60408 (4970-5509)
               

               
               3-599, gnl|echTel1|scaffold_299538 (103539-104036)
               

               
               3-599, gnl|Hg17|chr20 (34099156-34098234)
               

               
               3-599, gnl|hg17|chr3 (15436911-15437443)
               

               
               3-599, gnl|loxAfr1|scaffold_7014 (70742-70189)
               

               
               3-599, gnl|mm7|chr2 (135343978-135344473)
               

               
               3-599, gnl|Mm7|chr2 (156130903-156130054)
               

               
               3-599, gnl|oryCun1|scaffold_104333 (113-638)
               

               
               3-599, gnl|panTro1|chr2 (16052594-16053128)
               

               
               3-599, gnl|rheMac2|chr2 (157749057-157749583)
               

               
               3-599, gnl|rn3|chr3 (123557055-123557525)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               ton (0.1755)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               eep (0.122564)

	86-234, - strand, RNAz p=0.94207
	419-533, - strand, RNAz p=0.806854

	3-599, gnl\|bosTau2\|chr13 (44193956-44193370)
	3-599, gnl\|canFam2\|chr24 (27864689-27864164)
	3-599, gnl\|dasNov1\|scaffold_60408 (4970-5509)
	3-599, gnl\|echTel1\|scaffold_299538 (103539-104036)
	3-599, gnl\|Hg17\|chr20 (34099156-34098234)
	3-599, gnl\|hg17\|chr3 (15436911-15437443)
	3-599, gnl\|loxAfr1\|scaffold_7014 (70742-70189)
	3-599, gnl\|mm7\|chr2 (135343978-135344473)
	3-599, gnl\|Mm7\|chr2 (156130903-156130054)
	3-599, gnl\|oryCun1\|scaffold_104333 (113-638)
	3-599, gnl\|panTro1\|chr2 (16052594-16053128)
	3-599, gnl\|rheMac2\|chr2 (157749057-157749583)
	3-599, gnl\|rn3\|chr3 (123557055-123557525)