Non-Coding RNA Search

Ss1.1-Pla1-C0001061_D14.5

Sequence:


               
               CGTGGAGGTGTACCATGACCGGCGCTGGGGCACCGTGTGTGACGATGGCTGGGACAAGAA
GGACGGGGATGTGGTGTGCCGCATGCTGGGCTTCCCCAGCGCCGAGGACGTGCACCGGAC
GGCTCACTTCGGACAAGGCACAGGGAGAATTTGGATGGATGATGTTGCCTGCAAGGGCAC
AGAGGAAACCATCTTCCGCTGCAGCTTCTCCAAATGGGGGGTGACAAACTGCGGCCACGC
CGAGGATGCTGGAGTGACATGCAAGAGACACTGAAAGTGGGCGCAGCAGCCCAGAGTCCC
GGCCCTGCCGCTGAGCCTCCTTCCTGCATTCCTGGGGTGGGGGCATCGCTCGGAGCTACC
CTGACCGGACCTCTGCCCTCCCCACCCAGCACCCCCGTACCCCCATATGCCCATCCCAGG
ACCTTGGGGGCCTGTTGTCCTCCTCCCCTTGGACCTCTGCTCCACAGTGTGACTCTGGGA
TCTACTGCCCATATGTCCCTTCTACTATGGTCCTGTGTGGAGCCCTGATCAACTGGATCA
CCATCTTGCTTAGTCCTCTAAACACCCTGCCTCGGGCCTCCATATCCACGTTCCCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGAGGTGTACCATGACCGGCGCTGGGGCACCGTGTGTGACGATGGCTGGGACAAGAA
GGACGGGGATGTGGTGTGCCGCATGCTGGGCTTCCCCAGCGCCGAGGACGTGCACCGGAC
GGCTCACTTCGGACAAGGCACAGGGAGAATTTGGATGGATGATGTTGCCTGCAAGGGCAC
AGAGGAAACCATCTTCCGCTGCAGCTTCTCCAAATGGGGGGTGACAAACTGCGGCCACGC
CGAGGATGCTGGAGTGACATGCAAGAGACACTGAAAGTGGGCGCAGCAGCCCAGAGTCCC
GGCCCTGCCGCTGAGCCTCCTTCCTGCATTCCTGGGGTGGGGGCATCGCTCGGAGCTACC
CTGACCGGACCTCTGCCCTCCCCACCCAGCACCCCCGTACCCCCATATGCCCATCCCAGG
ACCTTGGGGGCCTGTTGTCCTCCTCCCCTTGGACCTCTGCTCCACAGTGTGACTCTGGGA
TCTACTGCCCATATGTCCCTTCTACTATGGTCCTGTGTGGAGCCCTGATCAACTGGATCA
CCATCTTGCTTAGTCCTCTAAACACCCTGCCTCGGGCCTCCATATCCACGTTCCCTGTGG

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-138, gnl|bosTau2|chr8 (6015606-6015743)
               

               
               1-138, gnl|canFam2|chr25 (32692132-32691922)
               

               
               1-138, gnl|danRer3|chr20 (1763566-1763744)
               

               
               1-138, gnl|dasNov1|scaffold_2606 (83185-83381)
               

               
               1-138, gnl|echTel1|scaffold_307351 (12810-12599)
               

               
               1-138, gnl|fr1|chrUn (279387246-279387440)
               

               
               1-138, gnl|galGal2|chr3 (103150244-103150041)
               

               
               1-138, gnl|hg17|chr8 (27792993-27793207)
               

               
               1-138, gnl|Hg17|chr8 (27793141-27793004)
               

               
               1-138, gnl|loxAfr1|scaffold_102619 (137-348)
               

               
               1-138, gnl|mm7|chr14 (60620256-60620046)
               

               
               1-138, gnl|Mm7|chr14 (60620107-60620244)
               

               
               1-138, gnl|monDom2|scaffold_1 (153877310-153877521)
               

               
               1-138, gnl|oryCun1|scaffold_208063 (300660-300454)
               

               
               1-138, gnl|panTro1|chr7 (28772273-28772487)
               

               
               1-138, gnl|rheMac2|chr8 (28030748-28030962)
               

               
               1-138, gnl|rn3|chr15 (45198201-45197991)
               

               
               1-138, gnl|tetNig1|chr14 (1175091-1175293)
               

               
               1-138, gnl|xenTro1|scaffold_689 (605149-604941)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-138, gnl|bosTau2|chr8 (6015606-6015743)
               

               
               1-138, gnl|canFam2|chr25 (32692132-32691922)
               

               
               1-138, gnl|danRer3|chr20 (1763566-1763744)
               

               
               1-138, gnl|dasNov1|scaffold_2606 (83185-83381)
               

               
               1-138, gnl|echTel1|scaffold_307351 (12810-12599)
               

               
               1-138, gnl|fr1|chrUn (279387246-279387440)
               

               
               1-138, gnl|galGal2|chr3 (103150244-103150041)
               

               
               1-138, gnl|hg17|chr8 (27792993-27793207)
               

               
               1-138, gnl|Hg17|chr8 (27793141-27793004)
               

               
               1-138, gnl|loxAfr1|scaffold_102619 (137-348)
               

               
               1-138, gnl|mm7|chr14 (60620256-60620046)
               

               
               1-138, gnl|Mm7|chr14 (60620107-60620244)
               

               
               1-138, gnl|monDom2|scaffold_1 (153877310-153877521)
               

               
               1-138, gnl|oryCun1|scaffold_208063 (300660-300454)
               

               
               1-138, gnl|panTro1|chr7 (28772273-28772487)
               

               
               1-138, gnl|rheMac2|chr8 (28030748-28030962)
               

               
               1-138, gnl|rn3|chr15 (45198201-45197991)
               

               
               1-138, gnl|tetNig1|chr14 (1175091-1175293)
               

               
               1-138, gnl|xenTro1|scaffold_689 (605149-604941)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               jca (0.11396)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	1-138, gnl\|bosTau2\|chr8 (6015606-6015743)
	1-138, gnl\|canFam2\|chr25 (32692132-32691922)
	1-138, gnl\|danRer3\|chr20 (1763566-1763744)
	1-138, gnl\|dasNov1\|scaffold_2606 (83185-83381)
	1-138, gnl\|echTel1\|scaffold_307351 (12810-12599)
	1-138, gnl\|fr1\|chrUn (279387246-279387440)
	1-138, gnl\|galGal2\|chr3 (103150244-103150041)
	1-138, gnl\|hg17\|chr8 (27792993-27793207)
	1-138, gnl\|Hg17\|chr8 (27793141-27793004)
	1-138, gnl\|loxAfr1\|scaffold_102619 (137-348)
	1-138, gnl\|mm7\|chr14 (60620256-60620046)
	1-138, gnl\|Mm7\|chr14 (60620107-60620244)
	1-138, gnl\|monDom2\|scaffold_1 (153877310-153877521)
	1-138, gnl\|oryCun1\|scaffold_208063 (300660-300454)
	1-138, gnl\|panTro1\|chr7 (28772273-28772487)
	1-138, gnl\|rheMac2\|chr8 (28030748-28030962)
	1-138, gnl\|rn3\|chr15 (45198201-45197991)
	1-138, gnl\|tetNig1\|chr14 (1175091-1175293)
	1-138, gnl\|xenTro1\|scaffold_689 (605149-604941)