Non-Coding RNA Search

Ss1.1-Pla1-C0001063_D22.5

Sequence:


               
               GTCTTTTGGAATGCTGCACAAAAATCTTTTGGGAACAAGACAGGCATAAATAAATAAAAT
CACCATGCTGTACAGTAGAAAAATATATATATAAATAAATGACAAAAAATAAAAAATAAA
ACAAAAAAAAATTAAAAAATGAATAAATACACAAGCTCTAGCAGATCATTCACAAATTCC
TCCAGATCCATTGATTATCACCATTCCTTGTGTTGGTTTTGCTTCTCCTGCCTGTCTGGT
GTAATGGTGCTTCCATGACTTTTGATGTTTGAAAGGCTCTTTAGCTCTGGCATGATCAAA
GTGTGTTTTACAGTTGTCTGAGATATTCCTTCTCTTTCTCTTTGTTCTGTAAGAGGGATT
GAGGAAGCCCATGTGTGCAAATACCCTTCCATACTTATCTTCTCCTCTTCTCTTAATCCC
TTTCCCCTCAACCCTAGGGTGCTAGCTGCCTGGAAGATGTTACCCTGGAGCTGAGCAGCT
CATGTCAGGAATTCTCCAGGCTTGGGCCTTTGGGCTGAGTTGACCCAGTGTGTAGGTGCT
GGGGATGGAGAGACCCATGGAATAGGTACTTACCTGAGTTATATTGAGAGACCTGAAGAC
ATAGCATCTTCACATAATCAACATGACCTTAACCTGTGATAGCACTGAGCTCCTTTTATT
TCTTTTTTCAGGTTGAGGAATGTGCTCAAATAATGCAAATATAATTGTTTTTAGTCCTGG
GGATTAAGAAACTTGGGGCATGTTCACATTACCTGATGATGTAAATACTGATGTTATGTT
TTAATTTTTTTTTTTTTGTACAGAAATGCTTATTTACCACTGAAATAATCTGAACAATAA
CTTTTAAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTTGGAATGCTGCACAAAAATCTTTTGGGAACAAGACAGGCATAAATAAATAAAAT
CACCATGCTGTACAGTAGAAAAATATATATATAAATAAATGACAAAAAATAAAAAATAAA
ACAAAAAAAAATTAAAAAATGAATAAATACACAAGCTCTAGCAGATCATTCACAAATTCC
TCCAGATCCATTGATTATCACCATTCCTTGTGTTGGTTTTGCTTCTCCTGCCTGTCTGGT
GTAATGGTGCTTCCATGACTTTTGATGTTTGAAAGGCTCTTTAGCTCTGGCATGATCAAA
GTGTGTTTTACAGTTGTCTGAGATATTCCTTCTCTTTCTCTTTGTTCTGTAAGAGGGATT
GAGGAAGCCCATGTGTGCAAATACCCTTCCATACTTATCTTCTCCTCTTCTCTTAATCCC
TTTCCCCTCAACCCTAGGGTGCTAGCTGCCTGGAAGATGTTACCCTGGAGCTGAGCAGCT
CATGTCAGGAATTCTCCAGGCTTGGGCCTTTGGGCTGAGTTGACCCAGTGTGTAGGTGCT
GGGGATGGAGAGACCCATGGAATAGGTACTTACCTGAGTTATATTGAGAGACCTGAAGAC
ATAGCATCTTCACATAATCAACATGACCTTAACCTGTGATAGCACTGAGCTCCTTTTATT
TCTTTTTTCAGGTTGAGGAATGTGCTCAAATAATGCAAATATAATTGTTTTTAGTCCTGG
GGATTAAGAAACTTGGGGCATGTTCACATTACCTGATGATGTAAATACTGATGTTATGTT
TTAATTTTTTTTTTTTTGTACAGAAATGCTTATTTACCACTGAAATAATCTGAACAATAA
CTTTTAAAATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-560, + strand, RNAz p=0.999982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-560, + strand, RNAz p=0.999982

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               435-560, + strand, RNAmicro p=0.999235
               

               
               425-569, - strand, RNAmicro p=0.932075

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               435-560, + strand, RNAmicro p=0.999235
               

               
               425-569, - strand, RNAmicro p=0.932075

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               114-834, gnl|bosTau2|chr22 (4938926-4938204)
               

               
               114-834, gnl|Hg17|chr3 (33101038-33100306)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-834, gnl|bosTau2|chr22 (4938926-4938204)
               

               
               114-834, gnl|Hg17|chr3 (33101038-33100306)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	435-560, + strand, RNAmicro p=0.999235
	425-569, - strand, RNAmicro p=0.932075

	114-834, gnl\|bosTau2\|chr22 (4938926-4938204)
	114-834, gnl\|Hg17\|chr3 (33101038-33100306)