Non-Coding RNA Search

Ss1.1-SmaI-SSZ84061.5

Sequence:


               
               ATCAAAGAAGCCTTTGTCCATCAGGACAAAAACTTTTCAAACCGCCCCATAGTCCCTATC
CAACAACGTGTCTTTAAGGACAAAGGAGTGGTCATGTCCAATGGCCAGGTATGGAAGGAG
CAAAGAAGGTTCGCCCTGACAACACTGAGGAACTTTGGTTTAGGAAAGAAGAGCTTAGAG
GAACGCATTCAGGAAGAGGCTCAGTACCTCATCCAGGCAATAGGAGAGGAGAATGGACAA
CCTTTCAACCCTCATTTCAAAATCAACAATGCTGTTTCCAACATCATTTGCTCCATCACA
TTTGGAGAACGCTTTGACTACCAGGATAATCAGTTCCAGGAGCTGCTGAAGCTGCTGGAT
GAGGTCATGTGTCTTCAGACATCAGTGTGGTGCCAGATTTACAATATCATTCCATGGATA
ATGAAATTCCTTCCTGGACCCCACCAAACCCTCTTCAGTAATTGGGAGAAACTGAAAATG
TTTGTTGCCCATGTGATTGAAAACCACAGGAGAGACTGGAATCCTGCTGAAGCAAGAGAC
TTCATTGAGGCTTACCTCCAGGAAATAGAAAAGCATACGGGTGATGCTACTTCAAGTTTC
CAAGAAGAAAACCTGATCTGTAGCACCCTGGACCTCTTCGTTGCTGGAACTGACACCACG
TCAACAACACTGCGCTGGGGTCTGCTGTACATGGCCCTGTACCCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAGAAGCCTTTGTCCATCAGGACAAAAACTTTTCAAACCGCCCCATAGTCCCTATC
CAACAACGTGTCTTTAAGGACAAAGGAGTGGTCATGTCCAATGGCCAGGTATGGAAGGAG
CAAAGAAGGTTCGCCCTGACAACACTGAGGAACTTTGGTTTAGGAAAGAAGAGCTTAGAG
GAACGCATTCAGGAAGAGGCTCAGTACCTCATCCAGGCAATAGGAGAGGAGAATGGACAA
CCTTTCAACCCTCATTTCAAAATCAACAATGCTGTTTCCAACATCATTTGCTCCATCACA
TTTGGAGAACGCTTTGACTACCAGGATAATCAGTTCCAGGAGCTGCTGAAGCTGCTGGAT
GAGGTCATGTGTCTTCAGACATCAGTGTGGTGCCAGATTTACAATATCATTCCATGGATA
ATGAAATTCCTTCCTGGACCCCACCAAACCCTCTTCAGTAATTGGGAGAAACTGAAAATG
TTTGTTGCCCATGTGATTGAAAACCACAGGAGAGACTGGAATCCTGCTGAAGCAAGAGAC
TTCATTGAGGCTTACCTCCAGGAAATAGAAAAGCATACGGGTGATGCTACTTCAAGTTTC
CAAGAAGAAAACCTGATCTGTAGCACCCTGGACCTCTTCGTTGCTGGAACTGACACCACG
TCAACAACACTGCGCTGGGGTCTGCTGTACATGGCCCTGTACCCTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               P79316_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               P79316_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               84-236, gnl|bosTau2|chr3 (64899298-64899450)
               

               
               84-236, gnl|Hg17|chr1 (60090006-60089854)
               

               
               84-236, gnl|Mm7|chr4 (95928754-95928602)
               


               
               394-573, gnl|bosTau2|chr3 (64984998-64985177)
               

               
               394-573, gnl|Hg17|chr1 (60087656-60087477)
               

               
               394-573, gnl|Mm7|chr4 (95924418-95924239)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-236, gnl|bosTau2|chr3 (64899298-64899450)
               

               
               84-236, gnl|Hg17|chr1 (60090006-60089854)
               

               
               84-236, gnl|Mm7|chr4 (95928754-95928602)
               


               
               394-573, gnl|bosTau2|chr3 (64984998-64985177)
               

               
               394-573, gnl|Hg17|chr1 (60087656-60087477)
               

               
               394-573, gnl|Mm7|chr4 (95924418-95924239)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

	84-236, gnl\|bosTau2\|chr3 (64899298-64899450)
	84-236, gnl\|Hg17\|chr1 (60090006-60089854)
	84-236, gnl\|Mm7\|chr4 (95928754-95928602)

	394-573, gnl\|bosTau2\|chr3 (64984998-64985177)
	394-573, gnl\|Hg17\|chr1 (60087656-60087477)
	394-573, gnl\|Mm7\|chr4 (95924418-95924239)