Non-Coding RNA Search

Ss1.1-SmaI-SSZ84072.5

Sequence:


               
               TTTTCATGCCCAGCGATGGGCACTGCCACTTGGACAGCGATGGCCTCTACAGTCGCAGCC
CAGAGTTTGACTACCCCTCCGTGGGTCAGGTAGCCCAGGCCCTCTCTGCGGCAAACATCC
AGCCCATCTTTGCTGTCACCAGTGCCACATTGCCTGTCTACCAGGAGCTGAGTAAGCTGA
TTCCTAAGTCCGCAGTGGGGGAGCTGAGTGAGGACTCCAGCAATGTGGTGCAGCTCATCA
TGGATGCTTATAATAGGCTGTCGTCCACTGTGACCCTTGAACATGAACACGCTCTACTCC
CTTCTGGGGTCCACATCTCTTACGAGTCCCAGTGTGGGGATCCTGAGAAGAGACAGGGGG
AGACTGGCGACCGGGGCCAGTGCAACCATGTCCGAATCAACCAGACGGTGAATTTTCTGG
TTACTCTCCAAGCAACCCACTGCCTCACAGAGCCCCATCTGCTGAGGTTCCGAGCCCGTG
GCTTCTCGGAGGAGCTGACTGTGGAGCTGCACACACTGTGCGATTGTAATTGCAATGACA
CTCAGCTCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCATGCCCAGCGATGGGCACTGCCACTTGGACAGCGATGGCCTCTACAGTCGCAGCC
CAGAGTTTGACTACCCCTCCGTGGGTCAGGTAGCCCAGGCCCTCTCTGCGGCAAACATCC
AGCCCATCTTTGCTGTCACCAGTGCCACATTGCCTGTCTACCAGGAGCTGAGTAAGCTGA
TTCCTAAGTCCGCAGTGGGGGAGCTGAGTGAGGACTCCAGCAATGTGGTGCAGCTCATCA
TGGATGCTTATAATAGGCTGTCGTCCACTGTGACCCTTGAACATGAACACGCTCTACTCC
CTTCTGGGGTCCACATCTCTTACGAGTCCCAGTGTGGGGATCCTGAGAAGAGACAGGGGG
AGACTGGCGACCGGGGCCAGTGCAACCATGTCCGAATCAACCAGACGGTGAATTTTCTGG
TTACTCTCCAAGCAACCCACTGCCTCACAGAGCCCCATCTGCTGAGGTTCCGAGCCCGTG
GCTTCTCGGAGGAGCTGACTGTGGAGCTGCACACACTGTGCGATTGTAATTGCAATGACA
CTCAGCTCCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               P79318_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               P79318_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               407-552, - strand, RNAz p=0.764832

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-552, - strand, RNAz p=0.764832

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               407-552, gnl|bosTau2|chr5 (19220550-19220695)
               

               
               407-552, gnl|Hg17|chr12 (51873953-51873808)
               

               
               407-552, gnl|Mm7|chr15 (102204848-102204703)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               407-552, gnl|bosTau2|chr5 (19220550-19220695)
               

               
               407-552, gnl|Hg17|chr12 (51873953-51873808)
               

               
               407-552, gnl|Mm7|chr15 (102204848-102204703)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               cty (0.10408)

	407-552, gnl\|bosTau2\|chr5 (19220550-19220695)
	407-552, gnl\|Hg17\|chr12 (51873953-51873808)
	407-552, gnl\|Mm7\|chr15 (102204848-102204703)