Ss1.1-Spl1-SPL010001D01.5
|
CTGGGGAGCAAGATGGCGGGAAGCAAGATGGCGGCAACCAAGAGGAAACGGCGTGGAGGC
CCGGCTGGTCCGGCGAAAAAGCTGAAAAGAAGCGAAAAAGACGCCAAGCCGCCTGCTAAG
TCAAGCGAGGTGGCAGAGGAAGCGGAGGAGGAAGATAGAAATCGTATTCCGGGCCCGGTT
TGCAAGGGCAAGTGGAAAAATAAGGAGCGGATTCTCATCTTTTCTTCCAGAGGAATAAAT
TTCAGAACAAGACATTTAATGCAAGACTTGAGAATGTTGATGCCACATTCTAAAGCAGAT
ACTAAAATGGACCGTAAAGATAAGTTATTTGTGATTAACGAGGTTTGTGAAATGAAGAAC
TGCAATAAATGTATCTATTTTGAAGCTAAGAAAAAACAAGATCTCTATATGTGGCTTTCA
AATTCACCCCATGGACCATCTGCTAAATTCCTTGTTCAAAATATTCATACCTTAGCTGAA
CTAAAGATGACTGGAAACTGTTTGAAAGGTTCTCGGCCTCTCTTGTCTTTTGACCCTGCT
TTTGATGAATTACCGCATTATGCTTTGTTAAAAGAACTCCTAATTCAGATCTTTAGTACC
CCACGGTATCATCCTAAAAGCCAGCCATTTGTGGACCATGTGTTTACGTTCACCATTTTG
GATAATAGGATATGGTTTCGGAACTTTCAGATCATAGAAGAAGATGCTGCTCTTGTAGAA
ATCGGACCCCGTTTTGTCTTAAATCTAATAAAGATTTTCCAGGGAAGTTTTGGAGGACCA
ACTTTGTATGAGAATCCTCATTACCAGTCACCAAACATGCATCGGCGTGTCATAAGATCC
ATCACAGCTGCAAAATACAAAGAGAAACAGCAAGTGAAAGATGTTCAGAAGCTGAGAAAG
AAAGAACCAAAGACTATTCTTCCTCATGATCCCACTGCAGATGTTTTTGTTACGCCAGCT
GAGGAGAAACCAGTAGAAATACAGTGGGTAAAACCAGAGCCAAAAGTTGATTTGAAAGCA
AGAAAGAAAAGGATTTACAAAAGGCAAAGAAAAATGAAACAGAAGATGAGCAGTGGGAAT
GCAAAATGAATCCATGAATAACTAATTGTTTTCAGTCTTATATTTATTTTGTATTCAATG
TGTACATATTTTTATTACCCAGTTATCTTATGTCTAATTAGTGTGGCATTTAGAAGAGAA
AAGTTAAAATTAAGATTTTTGTGGCTGGGGGGGTGTTTTTTCTAAATATAAATAAAATAT
AACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGGGGAGCAAGATGGCGGGAAGCAAGATGGCGGCAACCAAGAGGAAACGGCGTGGAGGC
CCGGCTGGTCCGGCGAAAAAGCTGAAAAGAAGCGAAAAAGACGCCAAGCCGCCTGCTAAG
TCAAGCGAGGTGGCAGAGGAAGCGGAGGAGGAAGATAGAAATCGTATTCCGGGCCCGGTT
TGCAAGGGCAAGTGGAAAAATAAGGAGCGGATTCTCATCTTTTCTTCCAGAGGAATAAAT
TTCAGAACAAGACATTTAATGCAAGACTTGAGAATGTTGATGCCACATTCTAAAGCAGAT
ACTAAAATGGACCGTAAAGATAAGTTATTTGTGATTAACGAGGTTTGTGAAATGAAGAAC
TGCAATAAATGTATCTATTTTGAAGCTAAGAAAAAACAAGATCTCTATATGTGGCTTTCA
AATTCACCCCATGGACCATCTGCTAAATTCCTTGTTCAAAATATTCATACCTTAGCTGAA
CTAAAGATGACTGGAAACTGTTTGAAAGGTTCTCGGCCTCTCTTGTCTTTTGACCCTGCT
TTTGATGAATTACCGCATTATGCTTTGTTAAAAGAACTCCTAATTCAGATCTTTAGTACC
CCACGGTATCATCCTAAAAGCCAGCCATTTGTGGACCATGTGTTTACGTTCACCATTTTG
GATAATAGGATATGGTTTCGGAACTTTCAGATCATAGAAGAAGATGCTGCTCTTGTAGAA
ATCGGACCCCGTTTTGTCTTAAATCTAATAAAGATTTTCCAGGGAAGTTTTGGAGGACCA
ACTTTGTATGAGAATCCTCATTACCAGTCACCAAACATGCATCGGCGTGTCATAAGATCC
ATCACAGCTGCAAAATACAAAGAGAAACAGCAAGTGAAAGATGTTCAGAAGCTGAGAAAG
AAAGAACCAAAGACTATTCTTCCTCATGATCCCACTGCAGATGTTTTTGTTACGCCAGCT
GAGGAGAAACCAGTAGAAATACAGTGGGTAAAACCAGAGCCAAAAGTTGATTTGAAAGCA
AGAAAGAAAAGGATTTACAAAAGGCAAAGAAAAATGAAACAGAAGATGAGCAGTGGGAAT
GCAAAATGAATCCATGAATAACTAATTGTTTTCAGTCTTATATTTATTTTGTATTCAATG
TGTACATATTTTTATTACCCAGTTATCTTATGTCTAATTAGTGTGGCATTTAGAAGAGAA
AAGTTAAAATTAAGATTTTTGTGGCTGGGGGGGTGTTTTTTCTAAATATAAATAAAATAT
AACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|55624470|ref|XP_517812.1| |
Protein identifier
|
gi|55624470|ref|XP_517812.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
12-195, gnl|bosTau2|chr19 (28069554-28069371) |
|
12-195, gnl|canFam2|chr7 (69994055-69994221) |
|
12-195, gnl|dasNov1|scaffold_45393 (5587-5744) |
|
12-195, gnl|echTel1|scaffold_212894 (8534-8699) |
|
12-195, gnl|Hg17|chr5 (34951584-34951768) |
|
12-195, gnl|hg17|chr8 (52510685-52510875) |
|
12-195, gnl|loxAfr1|scaffold_1238 (27447-27258) |
|
12-195, gnl|mm7|chr15 (10547552-10547385) |
|
12-195, gnl|Mm7|chr15 (10547559-10547377) |
|
12-195, gnl|monDom2|scaffold_3 (130806655-130806434) |
|
12-195, gnl|oryCun1|scaffold_123148 (4630-4789) |
|
12-195, gnl|panTro1|chr7 (54132603-54132793) |
|
12-195, gnl|rheMac2|chr8 (53978668-53978858) |
|
12-195, gnl|rn3|chr1 (131505458-131505269) |
| |
|
586-690, gnl|bosTau2|chr19 (28062614-28062510) |
|
586-690, gnl|Hg17|chr5 (34958992-34959096) |
|
586-690, gnl|Mm7|chr15 (10540423-10540319) |
| |
|
819-1266, gnl|bosTau2|chr19 (28061142-28060687) |
|
819-1266, gnl|Hg17|chr5 (34961087-34961536) |
|
819-1266, gnl|Mm7|chr15 (10538247-10537831) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
12-195, gnl|bosTau2|chr19 (28069554-28069371) |
|
12-195, gnl|canFam2|chr7 (69994055-69994221) |
|
12-195, gnl|dasNov1|scaffold_45393 (5587-5744) |
|
12-195, gnl|echTel1|scaffold_212894 (8534-8699) |
|
12-195, gnl|Hg17|chr5 (34951584-34951768) |
|
12-195, gnl|hg17|chr8 (52510685-52510875) |
|
12-195, gnl|loxAfr1|scaffold_1238 (27447-27258) |
|
12-195, gnl|mm7|chr15 (10547552-10547385) |
|
12-195, gnl|Mm7|chr15 (10547559-10547377) |
|
12-195, gnl|monDom2|scaffold_3 (130806655-130806434) |
|
12-195, gnl|oryCun1|scaffold_123148 (4630-4789) |
|
12-195, gnl|panTro1|chr7 (54132603-54132793) |
|
12-195, gnl|rheMac2|chr8 (53978668-53978858) |
|
12-195, gnl|rn3|chr1 (131505458-131505269) |
| |
|
586-690, gnl|bosTau2|chr19 (28062614-28062510) |
|
586-690, gnl|Hg17|chr5 (34958992-34959096) |
|
586-690, gnl|Mm7|chr15 (10540423-10540319) |
| |
|
819-1266, gnl|bosTau2|chr19 (28061142-28060687) |
|
819-1266, gnl|Hg17|chr5 (34961087-34961536) |
|
819-1266, gnl|Mm7|chr15 (10538247-10537831) |
|
liv (0.585137) |
|
tbr (0.462535) |
|
gul (0.355177) |
|
fbs (0.350693) |
|
mcp (0.341297) |
|
lin (0.291206) |
|
che (0.272628) |
|
ste (0.270416) |
|
sug (0.254582) |
|
tra (0.246184) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
eye (0.170503) |
|
nco (0.161734) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
liv (0.585137) |
|
tbr (0.462535) |
|
gul (0.355177) |
|
fbs (0.350693) |
|
mcp (0.341297) |
|
lin (0.291206) |
|
che (0.272628) |
|
ste (0.270416) |
|
sug (0.254582) |
|
tra (0.246184) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
eye (0.170503) |
|
nco (0.161734) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
