Non-Coding RNA Search

Ss1.1-Spl1-SPL010001E10.5

Sequence:


               
               AGTGTATCCCAGGCGGCGAGCCCCTAGCACCTGCTGCGGTTGAGGGTCTGCGGGCTGCTG
CGGTTGGACCCCGGCTCCACCCGGCATGAACCGCTACATTCTGCCGCTGTCCGTGCTGGG
CACGGCGGTGGGTGGCGCCGTGCTGCTCAAGGACTTTGTTGCTGGAGGGGCTTGTCCCAG
CAAGGCCACCATTCCCGGGAAGACTGTCATTGTGACAGGTGCCAACACGGGCATCGGGAA
GCAGACGGCCCTGGAGCTGGCCAAGAGAGGAGGCAACATCATTCTGGCCTGCCGAGACCT
GGAGAAGTGTGAGGCGGCGGCCAAGGACATTCGCGGGGAAACCCTGAATCACCGCGTCAG
CGCCCGGCACCTGGACTTGGCCTCCCTGACGTCCGTCCGAGAGTTTGCAGCCAAGATCAA
CGAAGAGGAGGAGCACCTGCACGTCCTGATCAACAACGCTGCCGTGATGCGGTGCCCCCA
CTGGACCACGGAGGATGGCTTTGAGATGCAGCTTGGCGTTAACTACCTGGGTCACTTTCT
TTTGACCAACTTGCTGCTGGACAAGCTGAAAGCCTCTGCCCCCTCGCGAATCATCAACCT
CTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTTGACGACCTGAACTGGGAAAAGAG
GAAGCACGACACAAAGGCAGCCTACTGCCAGAGTAAGCTGGCGCTGGTCCTCTTCTCCAT
GGAACTGAGCCAGCGGCTGCAAGGCACGGGCGTCACGGTCAATGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTATCCCAGGCGGCGAGCCCCTAGCACCTGCTGCGGTTGAGGGTCTGCGGGCTGCTG
CGGTTGGACCCCGGCTCCACCCGGCATGAACCGCTACATTCTGCCGCTGTCCGTGCTGGG
CACGGCGGTGGGTGGCGCCGTGCTGCTCAAGGACTTTGTTGCTGGAGGGGCTTGTCCCAG
CAAGGCCACCATTCCCGGGAAGACTGTCATTGTGACAGGTGCCAACACGGGCATCGGGAA
GCAGACGGCCCTGGAGCTGGCCAAGAGAGGAGGCAACATCATTCTGGCCTGCCGAGACCT
GGAGAAGTGTGAGGCGGCGGCCAAGGACATTCGCGGGGAAACCCTGAATCACCGCGTCAG
CGCCCGGCACCTGGACTTGGCCTCCCTGACGTCCGTCCGAGAGTTTGCAGCCAAGATCAA
CGAAGAGGAGGAGCACCTGCACGTCCTGATCAACAACGCTGCCGTGATGCGGTGCCCCCA
CTGGACCACGGAGGATGGCTTTGAGATGCAGCTTGGCGTTAACTACCTGGGTCACTTTCT
TTTGACCAACTTGCTGCTGGACAAGCTGAAAGCCTCTGCCCCCTCGCGAATCATCAACCT
CTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTTGACGACCTGAACTGGGAAAAGAG
GAAGCACGACACAAAGGCAGCCTACTGCCAGAGTAAGCTGGCGCTGGTCCTCTTCTCCAT
GGAACTGAGCCAGCGGCTGCAAGGCACGGGCGTCACGGTCAATGCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37182069|gb|AAQ88837.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37182069|gb|AAQ88837.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               437-764, gnl|bosTau2|chr11 (60534769-60534445)
               

               
               437-764, gnl|Hg17|chr2 (18658690-18658366)
               

               
               437-764, gnl|Mm7|chr12 (10430392-10430716)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               437-764, gnl|bosTau2|chr11 (60534769-60534445)
               

               
               437-764, gnl|Hg17|chr2 (18658690-18658366)
               

               
               437-764, gnl|Mm7|chr12 (10430392-10430716)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	437-764, gnl\|bosTau2\|chr11 (60534769-60534445)
	437-764, gnl\|Hg17\|chr2 (18658690-18658366)
	437-764, gnl\|Mm7\|chr12 (10430392-10430716)