Ss1.1-Spl1-SPL010001F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCGCCTCCCTGCGCTCCGCCTACGACAGCACCATGGAGACCATGAACTACGCACAGAT CCGGACCATCGCCATCATCGCCGAAGGCATCCCTGAGGCCCTCACGAGGAAGCTGATCAA GAAGGCAGAGCAGAAGGGAGTGACCATCATTGGACCTGCCACTGTTGGCGGCATCAAGCC CGGGTGCTTTAAGATTGGAAACACCGGCGGGATGCTGGATAACATCCTGGCCTCCAAGCT GTACCGCCCCGGCAGTGTTGCCTACGTGTCGCGTTCGGGCGGCATGTCCAATGAACTCAA CAATATCATCTCTCGGACCACGGATGGCGTCTACGAGGGTGTGGCCATCGGCGGGGACAG GTACCCCGGCTCCACGTTTATGGACCATGTGTTACGTTACCAGGACACTCCAGGAGTCAA GATGATTGTAGTTCTTGGGGAGATAGGGGGCACCGAGGAATATAAGATCTGCCGGGGCAT CAAGGAAGGCCGAATCACCAAGCCCGTGGTCTGCTGGTGCATCGGGACCTGTGCCACCAT GTTCTCCTCCGAGGTGCAGTTCGGCCACGCTGGAGCTTGTGCCAACCAGGCTTCTGAAAC CGCAATAGCCAAGAACCAGGCTTTGAAGGAGGCGGGCGTGTTTGTGCCCCGGAGCTTCGA TGAGCTTGGAGAGATCATCCAGTCCGTGTACGAGGATCTTGTGTCCAGAGGGGTCATCGT GCCTGCTCAGGAAGTGCCGCCCCCAACGGTGCCCATGGACTACTCGTGGGCCAGGGAGCT GGGCTTGATCCGCAAACCTGCCTCGTTCATGACCAGCATCTGCGACGAGCGAGGACAGGA GCTCATCTACGCGGGCATGCCCATCACCGAGGTCTTCAAGGAGGAGATGGGCATCGGCGG GGTCCTCGGCCTCCTCTGGTTCCAGAAGAGGTTACCCAAGTACTCCTGCCAGTTCATTGA GATGTGCCTGATGGTGACGGCCGATCACGGGCCAGCCGTCTCCGGGGCTCACAACACCAT CATCTGCGCTCGGGCCGGGAAGGACCTGGTCTCCAGCCTCACCTCAGGACTGCTCACCAT CGGCGACCGGTTCGGGGGTGCCCTGGATGCGGCAGCCAAGATGTTCAGTAAGGCCTTTGA CAGCGGCATCATCCCCATGGAGTTTGTGAACAAGATGAAGAAGGAGGGAAAACTGATCAT GGGCATCGGTCACCGAGTGAAGTCGATAAACAACCCAGACATGAGAGTGCAGATCCTCAA AGATTACGTCCGACAGCACTTCCCTGCCACCCCTCTGCTTGACTACGCGCTGGAAGTGGA GAAGATTACCACCTCGAAGAAACCAAACCTTATCCTGAATGTAGACGGTTTAATTGGAGT TGCATTTGTAGACATGCTTAGAAACTGCGGGTCCTTTACTCGGGAGGAAGCTGATGAATA TATTGACATTGGAGCCCTCAATGGCATCTTTGTGCTGGGAAGGAGTATGGGCTTCATTGG ACACTATCTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCGCCTCCCTGCGCTCCGCCTACGACAGCACCATGGAGACCATGAACTACGCACAGAT CCGGACCATCGCCATCATCGCCGAAGGCATCCCTGAGGCCCTCACGAGGAAGCTGATCAA GAAGGCAGAGCAGAAGGGAGTGACCATCATTGGACCTGCCACTGTTGGCGGCATCAAGCC CGGGTGCTTTAAGATTGGAAACACCGGCGGGATGCTGGATAACATCCTGGCCTCCAAGCT GTACCGCCCCGGCAGTGTTGCCTACGTGTCGCGTTCGGGCGGCATGTCCAATGAACTCAA CAATATCATCTCTCGGACCACGGATGGCGTCTACGAGGGTGTGGCCATCGGCGGGGACAG GTACCCCGGCTCCACGTTTATGGACCATGTGTTACGTTACCAGGACACTCCAGGAGTCAA GATGATTGTAGTTCTTGGGGAGATAGGGGGCACCGAGGAATATAAGATCTGCCGGGGCAT CAAGGAAGGCCGAATCACCAAGCCCGTGGTCTGCTGGTGCATCGGGACCTGTGCCACCAT GTTCTCCTCCGAGGTGCAGTTCGGCCACGCTGGAGCTTGTGCCAACCAGGCTTCTGAAAC CGCAATAGCCAAGAACCAGGCTTTGAAGGAGGCGGGCGTGTTTGTGCCCCGGAGCTTCGA TGAGCTTGGAGAGATCATCCAGTCCGTGTACGAGGATCTTGTGTCCAGAGGGGTCATCGT GCCTGCTCAGGAAGTGCCGCCCCCAACGGTGCCCATGGACTACTCGTGGGCCAGGGAGCT GGGCTTGATCCGCAAACCTGCCTCGTTCATGACCAGCATCTGCGACGAGCGAGGACAGGA GCTCATCTACGCGGGCATGCCCATCACCGAGGTCTTCAAGGAGGAGATGGGCATCGGCGG GGTCCTCGGCCTCCTCTGGTTCCAGAAGAGGTTACCCAAGTACTCCTGCCAGTTCATTGA GATGTGCCTGATGGTGACGGCCGATCACGGGCCAGCCGTCTCCGGGGCTCACAACACCAT CATCTGCGCTCGGGCCGGGAAGGACCTGGTCTCCAGCCTCACCTCAGGACTGCTCACCAT CGGCGACCGGTTCGGGGGTGCCCTGGATGCGGCAGCCAAGATGTTCAGTAAGGCCTTTGA CAGCGGCATCATCCCCATGGAGTTTGTGAACAAGATGAAGAAGGAGGGAAAACTGATCAT GGGCATCGGTCACCGAGTGAAGTCGATAAACAACCCAGACATGAGAGTGCAGATCCTCAA AGATTACGTCCGACAGCACTTCCCTGCCACCCCTCTGCTTGACTACGCGCTGGAAGTGGA GAAGATTACCACCTCGAAGAAACCAAACCTTATCCTGAATGTAGACGGTTTAATTGGAGT TGCATTTGTAGACATGCTTAGAAACTGCGGGTCCTTTACTCGGGAGGAAGCTGATGAATA TATTGACATTGGAGCCCTCAATGGCATCTTTGTGCTGGGAAGGAGTATGGGCTTCATTGG ACACTATCTTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 775-932, + strand, RNAz p=0.983576 | |
| 775-891, + strand, RNAz p=0.998852 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 775-932, + strand, RNAz p=0.983576 | |
| 775-891, + strand, RNAz p=0.998852 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 164-362, gnl|bosTau2|chr23 (89331-89529) | |
| 164-362, gnl|canFam2|chr9 (24272799-24272576) | |
| 164-362, gnl|danRer3|chr14 (36824035-36824253) | |
| 164-362, gnl|dasNov1|scaffold_199508 (4041-3821) | |
| 164-362, gnl|echTel1|scaffold_245729 (2890-3107) | |
| 164-362, gnl|fr1|chrUn (96664662-96664864) | |
| 164-362, gnl|galGal2|chr27_random (460409-460199) | |
| 164-362, gnl|hg17|chr17 (37295888-37296108) | |
| 164-362, gnl|Hg17|chr17 (37296087-37295889) | |
| 164-362, gnl|loxAfr1|scaffold_145120 (1531-1313) | |
| 164-362, gnl|mm7|chr11 (100602921-100603140) | |
| 164-362, gnl|Mm7|chr11 (100603119-100602921) | |
| 164-362, gnl|monDom2|scaffold_18 (52177193-52177416) | |
| 164-362, gnl|oryCun1|scaffold_203960 (66931-66711) | |
| 164-362, gnl|panTro1|chr19 (40495997-40496217) | |
| 164-362, gnl|rn3|chr10 (89451382-89451601) | |
| 164-362, gnl|tetNig1|chr2_random (26436-26637) | |
| 552-691, gnl|bosTau2|chr23 (99579-99718) | |
| 552-691, gnl|canFam2|chr9 (24282579-24282375) | |
| 552-691, gnl|danRer3|chr12 (16350633-16350460) | |
| 552-691, gnl|dasNov1|scaffold_59511 (7897-7696) | |
| 552-691, gnl|echTel1|scaffold_112096 (1270-1426) | |
| 552-691, gnl|fr1|chrUn (96664108-96664261) | |
| 552-691, gnl|galGal2|chr27_random (461596-461430) | |
| 552-691, gnl|hg17|chr17 (37288554-37288752) | |
| 552-691, gnl|Hg17|chr17 (37288705-37288566) | |
| 552-691, gnl|loxAfr1|scaffold_14304 (11684-11887) | |
| 552-691, gnl|mm7|chr11 (100593621-100593821) | |
| 552-691, gnl|Mm7|chr11 (100593768-100593631) | |
| 552-691, gnl|monDom2|scaffold_18 (52166103-52166276) | |
| 552-691, gnl|oryCun1|scaffold_179879 (159-6) | |
| 552-691, gnl|panTro1|chr19 (40488469-40488667) | |
| 552-691, gnl|rheMac2|chr16 (51979634-51979832) | |
| 552-691, gnl|rn3|chr10 (89444489-89444689) | |
| 552-691, gnl|tetNig1|chr2_random (25832-25989) | |
| 552-691, gnl|xenTro1|scaffold_394 (793484-793636) | |
| 775-932, gnl|bosTau2|chr23 (102670-102827) | |
| 775-932, gnl|canFam2|chr9 (24286349-24286201) | |
| 775-932, gnl|danRer3|chr12 (16352416-16352285) | |
| 775-932, gnl|echTel1|scaffold_89216 (1547-1693) | |
| 775-932, gnl|fr1|chrUn (96663609-96663744) | |
| 775-932, gnl|galGal2|chr27_random (462263-462117) | |
| 775-932, gnl|hg17|chr17 (37283575-37283720) | |
| 775-932, gnl|Hg17|chr17 (37283745-37283588) | |
| 775-932, gnl|loxAfr1|scaffold_14304 (8749-8895) | |
| 775-932, gnl|mm7|chr11 (100591169-100591314) | |
| 775-932, gnl|Mm7|chr11 (100591339-100591182) | |
| 775-932, gnl|monDom2|scaffold_18 (52163153-52163294) | |
| 775-932, gnl|oryCun1|scaffold_179879 (3095-2949) | |
| 775-932, gnl|panTro1|chr19 (40485041-40485186) | |
| 775-932, gnl|rheMac2|chr16 (51976811-51976956) | |
| 775-932, gnl|rn3|chr10 (89442046-89442192) | |
| 775-932, gnl|tetNig1|chr2_random (25278-25410) | |
| 775-932, gnl|xenTro1|scaffold_394 (792119-792263) | |
| 1082-1225, gnl|bosTau2|chr23 (104471-104614) | |
| 1082-1225, gnl|Hg17|chr17 (37281611-37281468) | |
| 1082-1225, gnl|Mm7|chr11 (100590559-100590416) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 164-362, gnl|bosTau2|chr23 (89331-89529) | |
| 164-362, gnl|canFam2|chr9 (24272799-24272576) | |
| 164-362, gnl|danRer3|chr14 (36824035-36824253) | |
| 164-362, gnl|dasNov1|scaffold_199508 (4041-3821) | |
| 164-362, gnl|echTel1|scaffold_245729 (2890-3107) | |
| 164-362, gnl|fr1|chrUn (96664662-96664864) | |
| 164-362, gnl|galGal2|chr27_random (460409-460199) | |
| 164-362, gnl|hg17|chr17 (37295888-37296108) | |
| 164-362, gnl|Hg17|chr17 (37296087-37295889) | |
| 164-362, gnl|loxAfr1|scaffold_145120 (1531-1313) | |
| 164-362, gnl|mm7|chr11 (100602921-100603140) | |
| 164-362, gnl|Mm7|chr11 (100603119-100602921) | |
| 164-362, gnl|monDom2|scaffold_18 (52177193-52177416) | |
| 164-362, gnl|oryCun1|scaffold_203960 (66931-66711) | |
| 164-362, gnl|panTro1|chr19 (40495997-40496217) | |
| 164-362, gnl|rn3|chr10 (89451382-89451601) | |
| 164-362, gnl|tetNig1|chr2_random (26436-26637) | |
| 552-691, gnl|bosTau2|chr23 (99579-99718) | |
| 552-691, gnl|canFam2|chr9 (24282579-24282375) | |
| 552-691, gnl|danRer3|chr12 (16350633-16350460) | |
| 552-691, gnl|dasNov1|scaffold_59511 (7897-7696) | |
| 552-691, gnl|echTel1|scaffold_112096 (1270-1426) | |
| 552-691, gnl|fr1|chrUn (96664108-96664261) | |
| 552-691, gnl|galGal2|chr27_random (461596-461430) | |
| 552-691, gnl|hg17|chr17 (37288554-37288752) | |
| 552-691, gnl|Hg17|chr17 (37288705-37288566) | |
| 552-691, gnl|loxAfr1|scaffold_14304 (11684-11887) | |
| 552-691, gnl|mm7|chr11 (100593621-100593821) | |
| 552-691, gnl|Mm7|chr11 (100593768-100593631) | |
| 552-691, gnl|monDom2|scaffold_18 (52166103-52166276) | |
| 552-691, gnl|oryCun1|scaffold_179879 (159-6) | |
| 552-691, gnl|panTro1|chr19 (40488469-40488667) | |
| 552-691, gnl|rheMac2|chr16 (51979634-51979832) | |
| 552-691, gnl|rn3|chr10 (89444489-89444689) | |
| 552-691, gnl|tetNig1|chr2_random (25832-25989) | |
| 552-691, gnl|xenTro1|scaffold_394 (793484-793636) | |
| 775-932, gnl|bosTau2|chr23 (102670-102827) | |
| 775-932, gnl|canFam2|chr9 (24286349-24286201) | |
| 775-932, gnl|danRer3|chr12 (16352416-16352285) | |
| 775-932, gnl|echTel1|scaffold_89216 (1547-1693) | |
| 775-932, gnl|fr1|chrUn (96663609-96663744) | |
| 775-932, gnl|galGal2|chr27_random (462263-462117) | |
| 775-932, gnl|hg17|chr17 (37283575-37283720) | |
| 775-932, gnl|Hg17|chr17 (37283745-37283588) | |
| 775-932, gnl|loxAfr1|scaffold_14304 (8749-8895) | |
| 775-932, gnl|mm7|chr11 (100591169-100591314) | |
| 775-932, gnl|Mm7|chr11 (100591339-100591182) | |
| 775-932, gnl|monDom2|scaffold_18 (52163153-52163294) | |
| 775-932, gnl|oryCun1|scaffold_179879 (3095-2949) | |
| 775-932, gnl|panTro1|chr19 (40485041-40485186) | |
| 775-932, gnl|rheMac2|chr16 (51976811-51976956) | |
| 775-932, gnl|rn3|chr10 (89442046-89442192) | |
| 775-932, gnl|tetNig1|chr2_random (25278-25410) | |
| 775-932, gnl|xenTro1|scaffold_394 (792119-792263) | |
| 1082-1225, gnl|bosTau2|chr23 (104471-104614) | |
| 1082-1225, gnl|Hg17|chr17 (37281611-37281468) | |
| 1082-1225, gnl|Mm7|chr11 (100590559-100590416) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cly (0.241284) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cag (0.151194) | |
| cov (0.132153) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cly (0.241284) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cag (0.151194) | |
| cov (0.132153) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cty (0.10408) |