Ss1.1-Spl1-SPL010001F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCAGCTCCATCCCGGCCATGGAGGCGCCCGCAGTCTGCCTGCTACCGCTGCTGCTGTT GCTCTGGGCCTGGGCCCCGGCGCCGGGCCGCGCCTCCCCCGAGGCGCTGCCGCTGGTCAA CGAGGACGTGAAGCGCACGGTGGATCTGAGCAGCCACCTGGCTAAGGTGACGGCCGAGGT GGTCCTGGCGCACGCGGGCAGCAGCTCCTCGCCCCGCGCCGCCTCCTTCCTACTAGCCCT GGAGCCCGAGCTGGAGGCCCGCTTGGCGCACCTCGGCGTGCAGGTGAAGGGAGAGGATGA GGAAGAGAACAATCTGGAAGTGAGAGAAACCAAAATTAAGGGTAAAAGCGGGAGATTCTT CACAGTCACACTCCCAGTTGCTCTTGATCCTGGGGCCAAGATTTCAGTCACTGTGGAAAC CGTTTACACCCACGTGCTTCAGCCATATCCAACACAGATCACCCAATCAGAGAAACAGTT TGTGGTTTTCGAGGGGAACCATTATTTCTATTCTCCCTACCCAACCAAGTCACAAAGCAT GCGTGTGAAGCTCGCCTCCCGAAACGTGGAAAGCTACACCAAGCTGGGGAACCCCACGCG CTCTGAGGACCTCCTGGATTACGGGCCTTTCCGAGATGTCCCTCCCTATAGTCAGGATAC CTTTAAAGTACATTCCGAGAACAACAGCCCCTTCCTGACCATCACCAGCATGACACGAGT CATTGAAGTCTCCCACTGGGGTAATATTGCTGTGGAAGAAAATGTGGACCTGAAGCACAC GGGGGCTGTGCTGAAGGGGCCGTTTTCCCGCTATGACTATCAGAGACAGCCAGACAGTGG GATCTCCTCCATCCGTTCTTTTAAGACCATACTTCCTGCTGCTGCCCAGGATGTTTATTA CCGGGATGAGATTGGCAATGTTTCCACCAGCCACCTTCTTATTTTGGACGATTCTGTAGA GATGGAAATCCGGCCTCGCTTCCCTCTTTTTGGCGGGTGGAAGACCCACTACATCGTTGG CTACAACCTCCCAAGCTACGAGTACCTCTATAATTTGGGAGACCAGTATGCACTGAAGAT GAGGCTTGTGGACCATGTGTTTGATGAGCAAGTGATAGACTCTCTGACTGTGAAGATCAT CTTGCCTGAAGGGGCCAAGAACATCCAGGTGGACAGTCCCTACGAGATCAGCCGAGCCCC TGACGAGCTGCACTACACCTACCTGGACACGTTTGGCCGCCCCGTGATCGTGGCCCACAA GAAGAACCTGGTGGAACAGCATATTCAGGACATTGTGGTGCACTACACATTCAACAAGGT GCTCATGCTGCAGGAGCCCCTGCTGGTGGTGGCCGCCTTTTACATCCTGTTCTTCACCGT CATTGTCTACGTCAGGCTGGACTTCTCCATCACAAAGGATCCGGCTGCAGAGGCCAGGAT GAAGGTGGCCTGCATCACAGAGCAGGTCTTGACCCTGGTCAACAAGAGAATAGGTCTCTA CCGCCACTTTGATGAGACGATCAATAGATACAAACAGTCCCGGGATGTGTCCACCCTCAA CAGCGGCAAGAAGAGCCTGGAGTTGGAGCACAAGGCCTTGACCAGTGAGGTGGCACTGCT ACAGTCCAGGCTGAAGACAGAAGGCTCTGACCTCTGTGACAAAGTAAGCGAAATGCAGAA ACTGGACGCACAGGTCAAGGAGCTGGTACTGAAGTCAGCGGTGGAGGCCGAGCGGCTGGT GGCTGGCAAGCTCAAGAAAGACACATACATTGAGAATGAGAAGCTTATCTCGGGAAAGCG CCAGGAGCTGGTCACCAAGATCGACCACATCTTGGATGCACTGTAGCCATGTACTTACTT TAAGAAGGCAGAATGGGGGTGGTGACCACCCAGGCCAGCAAATGCTGTCTTCTGTGTCCT GCAGAAGACCTTCAAGGAAGAGAGAAGCCAGGCCCTGCCTCAGGCAACACAAGAAGCTTA GTTGTTGTCCCCAGAGTTTTCTTTTTTCTTTTTTCCAAAAAACTACCACCACTTAAATCC CATTAAAAACAAAATATTTTTGTGTTTTGAAAAAAGAAATTTTTGAGTCGGTTTTGTTTG TTCTGAAGCCTAGGATATTCTTTTTGCCTGTAAGTCCCTTGTTTTATGCCCTTCTAATTT CTGATGTTTGGGTATTTTATAAGCATTTGTGTTTTTTAAAGTGTGTGTGGCCAAATGAAA ATAAAGTTGGGACTGTGAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCAGCTCCATCCCGGCCATGGAGGCGCCCGCAGTCTGCCTGCTACCGCTGCTGCTGTT GCTCTGGGCCTGGGCCCCGGCGCCGGGCCGCGCCTCCCCCGAGGCGCTGCCGCTGGTCAA CGAGGACGTGAAGCGCACGGTGGATCTGAGCAGCCACCTGGCTAAGGTGACGGCCGAGGT GGTCCTGGCGCACGCGGGCAGCAGCTCCTCGCCCCGCGCCGCCTCCTTCCTACTAGCCCT GGAGCCCGAGCTGGAGGCCCGCTTGGCGCACCTCGGCGTGCAGGTGAAGGGAGAGGATGA GGAAGAGAACAATCTGGAAGTGAGAGAAACCAAAATTAAGGGTAAAAGCGGGAGATTCTT CACAGTCACACTCCCAGTTGCTCTTGATCCTGGGGCCAAGATTTCAGTCACTGTGGAAAC CGTTTACACCCACGTGCTTCAGCCATATCCAACACAGATCACCCAATCAGAGAAACAGTT TGTGGTTTTCGAGGGGAACCATTATTTCTATTCTCCCTACCCAACCAAGTCACAAAGCAT GCGTGTGAAGCTCGCCTCCCGAAACGTGGAAAGCTACACCAAGCTGGGGAACCCCACGCG CTCTGAGGACCTCCTGGATTACGGGCCTTTCCGAGATGTCCCTCCCTATAGTCAGGATAC CTTTAAAGTACATTCCGAGAACAACAGCCCCTTCCTGACCATCACCAGCATGACACGAGT CATTGAAGTCTCCCACTGGGGTAATATTGCTGTGGAAGAAAATGTGGACCTGAAGCACAC GGGGGCTGTGCTGAAGGGGCCGTTTTCCCGCTATGACTATCAGAGACAGCCAGACAGTGG GATCTCCTCCATCCGTTCTTTTAAGACCATACTTCCTGCTGCTGCCCAGGATGTTTATTA CCGGGATGAGATTGGCAATGTTTCCACCAGCCACCTTCTTATTTTGGACGATTCTGTAGA GATGGAAATCCGGCCTCGCTTCCCTCTTTTTGGCGGGTGGAAGACCCACTACATCGTTGG CTACAACCTCCCAAGCTACGAGTACCTCTATAATTTGGGAGACCAGTATGCACTGAAGAT GAGGCTTGTGGACCATGTGTTTGATGAGCAAGTGATAGACTCTCTGACTGTGAAGATCAT CTTGCCTGAAGGGGCCAAGAACATCCAGGTGGACAGTCCCTACGAGATCAGCCGAGCCCC TGACGAGCTGCACTACACCTACCTGGACACGTTTGGCCGCCCCGTGATCGTGGCCCACAA GAAGAACCTGGTGGAACAGCATATTCAGGACATTGTGGTGCACTACACATTCAACAAGGT GCTCATGCTGCAGGAGCCCCTGCTGGTGGTGGCCGCCTTTTACATCCTGTTCTTCACCGT CATTGTCTACGTCAGGCTGGACTTCTCCATCACAAAGGATCCGGCTGCAGAGGCCAGGAT GAAGGTGGCCTGCATCACAGAGCAGGTCTTGACCCTGGTCAACAAGAGAATAGGTCTCTA CCGCCACTTTGATGAGACGATCAATAGATACAAACAGTCCCGGGATGTGTCCACCCTCAA CAGCGGCAAGAAGAGCCTGGAGTTGGAGCACAAGGCCTTGACCAGTGAGGTGGCACTGCT ACAGTCCAGGCTGAAGACAGAAGGCTCTGACCTCTGTGACAAAGTAAGCGAAATGCAGAA ACTGGACGCACAGGTCAAGGAGCTGGTACTGAAGTCAGCGGTGGAGGCCGAGCGGCTGGT GGCTGGCAAGCTCAAGAAAGACACATACATTGAGAATGAGAAGCTTATCTCGGGAAAGCG CCAGGAGCTGGTCACCAAGATCGACCACATCTTGGATGCACTGTAGCCATGTACTTACTT TAAGAAGGCAGAATGGGGGTGGTGACCACCCAGGCCAGCAAATGCTGTCTTCTGTGTCCT GCAGAAGACCTTCAAGGAAGAGAGAAGCCAGGCCCTGCCTCAGGCAACACAAGAAGCTTA GTTGTTGTCCCCAGAGTTTTCTTTTTTCTTTTTTCCAAAAAACTACCACCACTTAAATCC CATTAAAAACAAAATATTTTTGTGTTTTGAAAAAAGAAATTTTTGAGTCGGTTTTGTTTG TTCTGAAGCCTAGGATATTCTTTTTGCCTGTAAGTCCCTTGTTTTATGCCCTTCTAATTT CTGATGTTTGGGTATTTTATAAGCATTTGTGTTTTTTAAAGTGTGTGTGGCCAAATGAAA ATAAAGTTGGGACTGTGAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-296, gnl|bosTau2|chr22 (47380758-47381056) | |
| 1-296, gnl|Hg17|chr3 (129852359-129851964) | |
| 1-296, gnl|Mm7|chr6 (88159610-88159900) | |
| 122-228, gnl|bosTau2|chr18 (36513198-36513304) | |
| 122-228, gnl|Hg17|chr3 (129852242-129852136) | |
| 122-228, gnl|Mm7|chr6 (88159726-88159832) | |
| 347-656, gnl|bosTau2|chr22 (47384121-47384430) | |
| 347-656, gnl|canFam2|chr20 (5634282-5634535) | |
| 347-656, gnl|dasNov1|scaffold_15645 (23752-24005) | |
| 347-656, gnl|echTel1|scaffold_309319 (42806-43059) | |
| 347-656, gnl|fr1|chrUn (112452746-112452495) | |
| 347-656, gnl|galGal2|chr12 (9201314-9201061) | |
| 347-656, gnl|hg17|chr3 (129839337-129839590) | |
| 347-656, gnl|Hg17|chr3 (129839648-129839339) | |
| 347-656, gnl|mm7|chr6 (88165393-88165140) | |
| 347-656, gnl|Mm7|chr6 (88165080-88165389) | |
| 347-656, gnl|monDom2|scaffold_5 (47487429-47487681) | |
| 347-656, gnl|oryCun1|scaffold_129124 (7968-8221) | |
| 347-656, gnl|panTro1|chr2 (131833050-131833303) | |
| 347-656, gnl|rheMac2|chr11 (86197250-86196997) | |
| 347-656, gnl|tetNig1|chr11 (1035183-1034931) | |
| 347-656, gnl|xenTro1|scaffold_72 (1355338-1355590) | |
| 857-1059, gnl|bosTau2|chr22 (47376185-47376387) | |
| 857-1059, gnl|Hg17|chr3 (129831694-129831491) | |
| 857-1059, gnl|Mm7|chr6 (88170606-88170809) | |
| 1089-1469, gnl|bosTau2|chr24 (12511871-12511492) | |
| 1089-1469, gnl|Hg17|chr3 (129828342-129823871) | |
| 1089-1469, gnl|Mm7|chr6 (88174405-88177147) | |
| 1155-1299, gnl|bosTau2|chr22 (47377514-47377658) | |
| 1155-1299, gnl|Hg17|chr3 (129827557-129827413) | |
| 1155-1299, gnl|Mm7|chr6 (88175718-88175862) | |
| 1482-2249, gnl|bosTau2|chr24 (12511507-12510765) | |
| 1482-2249, gnl|Hg17|chr3 (129823911-129821515) | |
| 1482-2249, gnl|Mm7|chr6 (88177107-88179052) | |
| 1664-2239, gnl|bosTau2|chr22 (47367042-47367590) | |
| 1664-2239, gnl|Hg17|chr3 (129822134-129821515) | |
| 1664-2239, gnl|Mm7|chr6 (88178458-88179052) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-296, gnl|bosTau2|chr22 (47380758-47381056) | |
| 1-296, gnl|Hg17|chr3 (129852359-129851964) | |
| 1-296, gnl|Mm7|chr6 (88159610-88159900) | |
| 122-228, gnl|bosTau2|chr18 (36513198-36513304) | |
| 122-228, gnl|Hg17|chr3 (129852242-129852136) | |
| 122-228, gnl|Mm7|chr6 (88159726-88159832) | |
| 347-656, gnl|bosTau2|chr22 (47384121-47384430) | |
| 347-656, gnl|canFam2|chr20 (5634282-5634535) | |
| 347-656, gnl|dasNov1|scaffold_15645 (23752-24005) | |
| 347-656, gnl|echTel1|scaffold_309319 (42806-43059) | |
| 347-656, gnl|fr1|chrUn (112452746-112452495) | |
| 347-656, gnl|galGal2|chr12 (9201314-9201061) | |
| 347-656, gnl|hg17|chr3 (129839337-129839590) | |
| 347-656, gnl|Hg17|chr3 (129839648-129839339) | |
| 347-656, gnl|mm7|chr6 (88165393-88165140) | |
| 347-656, gnl|Mm7|chr6 (88165080-88165389) | |
| 347-656, gnl|monDom2|scaffold_5 (47487429-47487681) | |
| 347-656, gnl|oryCun1|scaffold_129124 (7968-8221) | |
| 347-656, gnl|panTro1|chr2 (131833050-131833303) | |
| 347-656, gnl|rheMac2|chr11 (86197250-86196997) | |
| 347-656, gnl|tetNig1|chr11 (1035183-1034931) | |
| 347-656, gnl|xenTro1|scaffold_72 (1355338-1355590) | |
| 857-1059, gnl|bosTau2|chr22 (47376185-47376387) | |
| 857-1059, gnl|Hg17|chr3 (129831694-129831491) | |
| 857-1059, gnl|Mm7|chr6 (88170606-88170809) | |
| 1089-1469, gnl|bosTau2|chr24 (12511871-12511492) | |
| 1089-1469, gnl|Hg17|chr3 (129828342-129823871) | |
| 1089-1469, gnl|Mm7|chr6 (88174405-88177147) | |
| 1155-1299, gnl|bosTau2|chr22 (47377514-47377658) | |
| 1155-1299, gnl|Hg17|chr3 (129827557-129827413) | |
| 1155-1299, gnl|Mm7|chr6 (88175718-88175862) | |
| 1482-2249, gnl|bosTau2|chr24 (12511507-12510765) | |
| 1482-2249, gnl|Hg17|chr3 (129823911-129821515) | |
| 1482-2249, gnl|Mm7|chr6 (88177107-88179052) | |
| 1664-2239, gnl|bosTau2|chr22 (47367042-47367590) | |
| 1664-2239, gnl|Hg17|chr3 (129822134-129821515) | |
| 1664-2239, gnl|Mm7|chr6 (88178458-88179052) |
| Expressed library(ies): 64 entry(ies) | More info |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
| bla (0.746083) | |
| cov (0.660764) | |
| tes (0.623441) | |
| sto (0.539471) | |
| lyg (0.532411) | |
| duo (0.518403) | |
| ova (0.516529) | |
| nje (0.49776) | |
| jej (0.494609) | |
| spl (0.429553) | |
| amn (0.417711) | |
| aor (0.390549) | |
| nlu (0.383362) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| gul (0.355177) | |
| ebs (0.354904) | |
| ill (0.351185) | |
| ton (0.351) | |
| eye (0.341006) | |
| cki (0.330469) | |
| csp (0.322373) | |
| mga (0.32041) | |
| cli (0.305623) | |
| eje (0.296501) | |
| cst (0.280073) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| tra (0.246184) | |
| cly (0.241284) | |
| cty (0.20816) | |
| fli (0.202881) | |
| col (0.195008) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.746083) | |
| cov (0.660764) | |
| tes (0.623441) | |
| sto (0.539471) | |
| lyg (0.532411) | |
| duo (0.518403) | |
| ova (0.516529) | |
| nje (0.49776) | |
| jej (0.494609) | |
| spl (0.429553) | |
| amn (0.417711) | |
| aor (0.390549) | |
| nlu (0.383362) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| gul (0.355177) | |
| ebs (0.354904) | |
| ill (0.351185) | |
| ton (0.351) | |
| eye (0.341006) | |
| cki (0.330469) | |
| csp (0.322373) | |
| mga (0.32041) | |
| cli (0.305623) | |
| eje (0.296501) | |
| cst (0.280073) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| tra (0.246184) | |
| cly (0.241284) | |
| cty (0.20816) | |
| fli (0.202881) | |
| col (0.195008) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |